Gene detail

Detailed information of aawi_s0238.g21.t3 in Acropora awi

Genomic Location: sc0000238_pilon:338073...355305
NR annotation: XP_029188606.2, cold shock domain-containing protein E1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0238.g21.t3

CATCAGTGTTATGGTGAACTGAAGCTCTAAGATGGCGGCCTCTCGATTCTGTGGTTCGGGGAGGAATTACTCGCCTAGTACGCGATATTCCTTTCGGAGGAAATTCCGCGAGCAAATAGAATTGGAAAGAAGATGATAGCCTCAAACTCTTCACCGGTAAAATCAACCCCATCTATAGTGGCCTTCCCTTCCTCAAATTCTTTGGAATTCATTTGCCATACTCAAGCTTAACGGAGAAGTTGTGCCTTTGTCTTTTGGCAAATATAGAGAATCAGAGTTCAAGGCGAAATCAATGTTGTCAAGCATTTTTGTATTGGTATAATTTGTTATTTAGAGAAGCCATTTTAAAGGAGGATTCCAGAGGATTTGTATATTTTTTTATCTGCAAGGAGCATCGATCAAATTCTAAATATGACAACTGAAACTTGGAGGATTTCTGAACGTAGAGATCGCACGAGAACAAGTCAGTATGACTTCAGTGAACAAGATTATTACATTGGCAACCACAACGCTCGGAGAACATTCTCCTGCAATGGCAATTCTTTCACCAGTCACACTAGTGTCAGAGAAACTGGAGTAATTGAAAAACTTTTGCATTCGTATGGCTTTATCCAGTGCTGTGAGAGAGACCTACGGATTTTTTTCCACTATAGTCAAATCAATGAAGACCCTGAAGACCTTCATGTTGGAGATGAGTTGGAGTTTGAAGTCACCTCAGATCAGCGGACAGGCAAACCAATTGCTTGCCGTGTGGTAAGACTTGAAGCAGGATCAGTTTCTTTCGAGATTCGTAGCGAAGAAAAAGTGCATGGAGTCATAGATGCTGAACCCAAATTATCTGCTAGGAACAATATTAAATCTCCCTCAAATGGAGTTATTGATCCTGATATGGGGAGGGTCAGCTATGAGAGAAATGGAGAATTCTTCTACCTGTCCTTTTCATCAAATGATGTTGTAAACACTGGCACTCCTCTCCACAAAGGAGACAAAGTTGAATTTTATGTGACCACAGACAAAAGAACTGGAGTTGTCCGAGCCAGAGAAATAACTCTCTTGGAAGCAGTGGAAACTGAGAGATACCAGTATGACTTCAGTGAACAAGATTATTACATTGGCAACCACAATGCTCGGAGAACATTCTCCTGCAATGGCAATTCTTTCACCAGTCACACTAGTGTCAGAGAAACTGGAGTAATTGAAAAACTTTTGCATTCGTATGGCTTTATCCAGTGCTGTGAGAGAGACCTACGGATTTTTTTCCACTATAGTCAAATCAATGAAGACCCTGAAGACCTTCATGTTGGAGATGAGTTGGAGTTTGAAGTCACCTCAGATCAGCGGACAGGCAAACCAATTGCTTGCCGTGTGATTCGTAGCGAAGAAAAAGTGCATGGAGTCATAGATGCTGAACCCAAATTGTCCGCAAGGAACAATGTTAAATCTCCTTCAAATGGAGTTATTGATCCTGATATGGGGAGGGTCAGCTATGAGAGAAATGGAGAATTCTTCTACCTGTCCTTTTCGTCAAATGATGTTGTAAACACTGGCACTCCTCTCCACAAAGGAGACAAAGTTGAATTTTATGTGACCACAGACAAAAGAACTGGAGTTGTCCGAGCCAGAGAAATAACTCTCTTGGAAGCAGTGGAAACTGAGAGATACCAGGGAGTTGTTTCTTCAATGAAAGAATCGTTTGGCTTTATTGAAAGGGCAGACAAAGTTAGCGAGATTTTCTTCCATTACAGTGAATTCTGTGGAGAGGTCAGTGAGCTCATGTTATGTGATGATGTGGAGTTTGGGATACAAGTAAGAAATGGCAAAGAAGTGGCAGTGCGCATCAAAAAACTTCCTGAAGGCACTGTGAAGTTTGAAGATGTGAGCACTACCAGATATATAGGAACTGTGGATCGACCTTTGAGTAAATCAGCTTCAAAGAGACAACATGACCCTCTTCATGGCAAAATAGTGTACACAGTCCCTGGCAATGGTGATATTGAGGAGGAGATTGTGTTTTCTGAAAGAGACTTGCAGGGAGACCTCTCTCTTAGAACTGGAGATATTGTGGAATTCAATATTGCTGTGGGTATGTAATAATTCTAATGTTACCCTTGTTGTTTTTCCCACAAGATACTATGTTTATGTGTGCATTAGTGTCTGTTGAGTGGAGTTAAAAGCTGCTGAGCACAGTTGTTGTCATAACcagggttttcattaacttttgaagtagaagggcactggcttgtgagtaggcaggtaccctgtgaaactgagggctgaagccctgaaactgtaggggggtccgggggcatgctcccccggaaaatttttagaacttcagtctcccaggagtgcattttctagcaatgtgggaaagaaatcttcgtttTGTTA

Protein

Uniprot

Gene family

Uniprot term	Description
P18395	Cold shock domain-containing protein E1 OS=Rattus norvegicus OX=10116 GN=Csde1 PE=2 SV=1
Q91W50	Cold shock domain-containing protein E1 OS=Mus musculus OX=10090 GN=Csde1 PE=1 SV=1
O75534	Cold shock domain-containing protein E1 OS=Homo sapiens OX=9606 GN=CSDE1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12913	UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan