Genomic Location: sc0000249_pilon:152606...161420
NR annotation: XP_044174947.1, protein XRP2-like [Acropora millepora]
Species Acropora awi · all data for this species · gene families
| CDS |
| aawi_s0249.g9.t1 |
| Transcript |
| aawi_s0249.g9.t1 |
| Protein |
| aawi_s0249.g9.t1 |
| UniProt accession | Description |
|---|---|
| F1QC45 | Protein XRP2 OS=Danio rerio OX=7955 GN=rp2 PE=1 SV=1 |
| Q8AVX5 | Protein XRP2 OS=Xenopus laevis OX=8355 GN=rp2 PE=2 SV=3 |
| Q5ZHN4 | Protein XRP2 OS=Gallus gallus OX=9031 GN=RP2 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005236 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07986 all species → | TBCC | Tubulin binding cofactor C | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012945 all species → | Domain | Tubulin binding cofactor C-like domain | Interproscan |
| IPR017901 all species → | Domain | C-CAP/cofactor C-like domain | Interproscan |
| IPR036223 all species → | Homologous_superfamily | Adenylate cyclase-associated CAP, C-terminal superfamily | Interproscan |
| IPR036850 all species → | Homologous_superfamily | Nucleoside diphosphate kinase-like domain superfamily | Interproscan |
| IPR039093 all species → | Family | Protein XRP2 | Interproscan |
| IPR016098 all species → | Homologous_superfamily | Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal | Interproscan |
| IPR006599 all species → | Domain | CARP motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15440 all species → | XRP2 PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0005929 all species → | Cellular Component | cilium | Interproscan |
| GO:0006892 all species → | Biological Process | post-Golgi vesicle-mediated transport | Interproscan |
| GO:1990075 all species → | Cellular Component | periciliary membrane compartment | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18272 | RP2; protein XRP2 | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
