Gene detail

Detailed information of aawi_s0269.g15.t1 in Acropora awi

Genomic Location: sc0000269_pilon:367266...396106
NR annotation: XP_044163734.1, nucleotide-binding oligomerization domain-containing protein 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0269.g15.t1

ATGAGAGATGCACAAAACATAAATTTCCACATAACAAATGTCTagagaactcatgatgcacttggggagatcaaagaaaaccaacagaaaactaacaatgagcttggaaagatgaaagaaaatcaagagagaaccaacaTtgagcttggagaagtgaaagagatggtgaagcagcttcagccatgcgaaaggagcaccaaagaatctctgaaagatgagcaagtttcagatccttttgaccttgtaaaatacatcagcattattcgcaagctttacGaagaccgcgaaggatggttggcgcctttcccgtggtgcgaagagtttcgattcaatctcgataccatttttaccagactcaagtttgTcagcagaaaaaaggagcgaggaataaaaactgatgTcattgttgacatgtttcaaatatttcaaccgcatcaagaatgttcacagccaaagagggtcttgattgaagggcagccaggtatgggaaagacaacgtattgtcacaagattgcttacgactgggcaaagaaacgaaaaggtggcgagtcatttcctgatgtaacacttgtgctactattaaaatgccgagacatcaacggtgacctatgggaggctattgatgaccagcttttaccgagagaggtgaacgaagaagagaaagaaagatttttcaagttcattcggggccaccagtcaaaggttttactagtgcttgacggattagatgagttacccagtaaccaattgttgatctataaagacatcattcaaggaagagttcttccagagtcttacatagtggttactgcacgagacaaagttggagtgaaggtacgagtatgctgccacaccctgttagaggtagaaggatttaccaaggctgatgccagaaagttcattcggaggtatttcaaaggaaagcgtttggcgaaaaagttgttggacaagctggactctgacagtaccctacgagaccttacaagaaatccgttaaacacagctcttctatgcctcctctgcgaagactttggaggaaaatttcccgaaagtagaactctgctttaccttgaaatagttgagtgcgtgctgagaaggtacaggcgGAAGATAAAGTCACCAGAAACAAATGaagacctcgtagcattatacaaagttgagctgaagcaacttggctttgtcgccatggaaggtttgcacaatgatagcatgtattttgacgagagtgcatttaaaggtttctcaagggatgtaatatctggcctcggctttttgtcagtggaagctggacgaagcaaacgaagaccaagtcgaagctatggcttcatgcacaaaagcTTTCAAGAATTTTTCgcagcactttgtcactgttgtcagCttcttgaaggagaaatctctgttgatagcttagttgctgactgtagatattttcaagagttccaacaggtgctgatgttcacgagtggtatgttggctcaaaagtgcgaAgcagcagccaaggcatttatcgctggcatagctacccaagtcaacctggagggtagccgtttacccgttgcattggcttgtatcaatgaatgcaagagagaggagaattcttttggcaaagaaatggcacagttttttggctcacatCttaaacttcagacggttgatTgctcaagattgaccaacgaacttgttgctgtgtgtattgaaaccttaaaaacgaattccacagttacagaactggttctccatcattgtaacattgatgatgcaaatgctgttgaactggcttggcaattgaaagaaaattcaacgctgacatcgctgaacttgtctaataatgctattggcgtagttggcgctgatgcactggctaaaggattgaaagaaaattcaacactgacatcgctggacttgtgtgctaacaatattggcgaagttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgagcttgcgttttaataaaatcggcaatgacggtgctgatgcaatggctaaaggactgaaagaaaattcaacactgacatcgctgagcttgtctgctaataatattggcaacgttggcgctgatgcactggccaaaggattgaaagaaaattccacgctgacatcgctaaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcttgataatcaaataggtgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcactgaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcgctttaatgaaatcggcaatgacggtgctgatgcactggctaatggattgaaagaaaattcaacgctgacatcactgaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaatttaaccctgacatcgctgaacttgtctgataatgatattggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgactgctaatagtattgacaaagttggcgctgatgcactggctaaaggattgaaagaaaattcaatgctgacatcgctgaacttgcctgatagtgatattggcgaagttggcgctgatgcactagctaaagcattgaaagaaaatacaacgctgacagaaatgcctttacatgataatctcatcgacgaGGAAGTGGATGTTGCCGCTGCAAGAGAATCAAGGGCTAAGAGTCCTGCTGAATGTTAA

Transcript

aawi_s0269.g15.t1

atatgtcacccatgttattaacaacatgattttcttttagttgcctagaaatacacaagaccttGTTTGGGATTTACTGGAAAAACAAGACAAACTTGCAAGACGTGTTTTGAGTTAAACTGTAGATAACTGGTCAGACGTTTTGTGAAGCAGATGAGAGATGCACAAAACATAAATTTCCACATAACAAATGTCTagagaactcatgatgcacttggggagatcaaagaaaaccaacagaaaactaacaatgagcttggaaagatgaaagaaaatcaagagagaaccaacaTtgagcttggagaagtgaaagagatggtgaagcagcttcagccatgcgaaaggagcaccaaagaatctctgaaagatgagcaagtttcagatccttttgaccttgtaaaatacatcagcattattcgcaagctttacGaagaccgcgaaggatggttggcgcctttcccgtggtgcgaagagtttcgattcaatctcgataccatttttaccagactcaagtttgTcagcagaaaaaaggagcgaggaataaaaactgatgTcattgttgacatgtttcaaatatttcaaccgcatcaagaatgttcacagccaaagagggtcttgattgaagggcagccaggtatgggaaagacaacgtattgtcacaagattgcttacgactgggcaaagaaacgaaaaggtggcgagtcatttcctgatgtaacacttgtgctactattaaaatgccgagacatcaacggtgacctatgggaggctattgatgaccagcttttaccgagagaggtgaacgaagaagagaaagaaagatttttcaagttcattcggggccaccagtcaaaggttttactagtgcttgacggattagatgagttacccagtaaccaattgttgatctataaagacatcattcaaggaagagttcttccagagtcttacatagtggttactgcacgagacaaagttggagtgaaggtacgagtatgctgccacaccctgttagaggtagaaggatttaccaaggctgatgccagaaagttcattcggaggtatttcaaaggaaagcgtttggcgaaaaagttgttggacaagctggactctgacagtaccctacgagaccttacaagaaatccgttaaacacagctcttctatgcctcctctgcgaagactttggaggaaaatttcccgaaagtagaactctgctttaccttgaaatagttgagtgcgtgctgagaaggtacaggcgGAAGATAAAGTCACCAGAAACAAATGaagacctcgtagcattatacaaagttgagctgaagcaacttggctttgtcgccatggaaggtttgcacaatgatagcatgtattttgacgagagtgcatttaaaggtttctcaagggatgtaatatctggcctcggctttttgtcagtggaagctggacgaagcaaacgaagaccaagtcgaagctatggcttcatgcacaaaagcTTTCAAGAATTTTTCgcagcactttgtcactgttgtcagCttcttgaaggagaaatctctgttgatagcttagttgctgactgtagatattttcaagagttccaacaggtgctgatgttcacgagtggtatgttggctcaaaagtgcgaAgcagcagccaaggcatttatcgctggcatagctacccaagtcaacctggagggtagccgtttacccgttgcattggcttgtatcaatgaatgcaagagagaggagaattcttttggcaaagaaatggcacagttttttggctcacatCttaaacttcagacggttgatTgctcaagattgaccaacgaacttgttgctgtgtgtattgaaaccttaaaaacgaattccacagttacagaactggttctccatcattgtaacattgatgatgcaaatgctgttgaactggcttggcaattgaaagaaaattcaacgctgacatcgctgaacttgtctaataatgctattggcgtagttggcgctgatgcactggctaaaggattgaaagaaaattcaacactgacatcgctggacttgtgtgctaacaatattggcgaagttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgagcttgcgttttaataaaatcggcaatgacggtgctgatgcaatggctaaaggactgaaagaaaattcaacactgacatcgctgagcttgtctgctaataatattggcaacgttggcgctgatgcactggccaaaggattgaaagaaaattccacgctgacatcgctaaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcttgataatcaaataggtgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcactgaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgcgctttaatgaaatcggcaatgacggtgctgatgcactggctaatggattgaaagaaaattcaacgctgacatcactgaacttgcgttttaataaaatcggcaatgagggtgctgatgcactggctaaaggattgaaagaaaatttaaccctgacatcgctgaacttgtctgataatgatattggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatcgctgaacttgactgctaatagtattgacaaagttggcgctgatgcactggctaaaggattgaaagaaaattcaatgctgacatcgctgaacttgcctgatagtgatattggcgaagttggcgctgatgcactagctaaagcattgaaagaaaatacaacgctgacagaaatgcctttacatgataatctcatcgacgaGGAAGTGGATGTTGCCGCTGCAAGAGAATCAAGGGCTAAGAGTCCTGCTGAATGTTAAAGGGATATTACAAGAATACAGATGTTGTTGGACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR053040	Family	Leucine-rich repeat-containing protein 71	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46984	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22614	NLRC3, NOD3; NLR family CARD domain-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala