Gene detail

Detailed information of aawi_s0271.g16.t1 in Acropora awi

Genomic Location: sc0000271_pilon:173186...189641
NR annotation: XP_029185460.2, muskelin-like [Acropora millepora]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0271.g16.t1

TTTGTTTTGCATGCGGATTTGCATGCGCAGTCGTTGAAGTGCGCCAAAATGGCCGCTTCGGGGGCAGCGGAACCCCGAGTTTTAACGTACACAATCCACAAGTATTCAAGCCATTCCGCCAGTTATTTACCTACGAATGTTCTTATCAACAATCCAAGTGATCAGAGTTCTCGATGGTCTTCGGATAGTAATAATCCACCTCAGTTTCTAATACTCAAACTGGAGAAACCAGCAATTGCAATGGTTATAAAGTTTGGTAAATATGAAAAGGCTCATGTCTGTAACCTGAAGAAGTTCAAGATTTATGGAGGATTGAATGATGAACACATGACAGAGTTGCTGCAAAGTGGTTTATGCAATGACAATGTTGAAGAGACATTTAATCTGAAACATGAATTGCATGGTAAAATGTTTCCATGCAGTTTTATAAAAATAGTTCCAATCATGTCCCATGGACCAAGCTTTAACTTCAGCATCTGGTTTGTGGAGCTGCGTGGAGTTGATGATCCAGAAATTGTTGATCCAAGTCTTGCTTGGTTTAATACTTATCGTGAAAGAGAAGCCATCCGTCTCTGTCTGAAGCACTTTAGACAGCAGAACTACACTGAGGCGTTTGAGTCCCTGCAGAAAAGAACAAAAATTACTCTAGAACATCCAATGCTAACAGAACTTCACGACAAGCTGGTAATAAATGATGACTTTGAAGGGTGTGAAAGGGTCATAGAAGAGGCTGCAAAGAATTCTATTTTTAGTCAGTATATCAGTCAGCTTGATTACAAGCCAAAGTGGACAGCAATTTTACCTCTCGCTCAAAATGAGAACGATTCAAGTCGCCCTCATCCAGGTATGAGAGGAGGCCATCAAATGGCAATTGATATGGAAGCCCAAGTGATTTATCTAATCGGAGGGTGGGACGGCATCATGGACCTTTCTGATTTCTGGTCGTTCAGTGTTGAGTCTGGACGCTGGAGCCGTCTGTCCAGCAACACAGAGCAAGATGGTGGTCCGTCTGCAAGGTCTTGTCACAAAATGTGCCTGGATGGAAAGAAGAAGCTGATATATACCTTGGGAAGATACCTTGACTCGCGCACGAGAAATGCATCTCCTCTTAAGAATGATTTTTATGTGTATGATATAACGTCAAACCAGTGGACACTTATAAGCGAAGATACCTCAACCGAAGGAGGACCAGCTCTCATATTTGATCACCAGATGTGTATAGATGTCGAGAAAAGTACCATTTATGTATTTGGAGGTCGTATACTAACAAGTACTGGGTCTGACGAGAGAGGACAAGAGCTTTCATTCAGTGGACTTTTCTCTTATCATTGTCCCACAAATACATGGACTAAGCTACTGGATGATTGCCCCGCACTGCCATCTAGGAATGGTCATTCGATGTTATTTCATCCTGGGAAAAGACTTTTATATATCTTTGCTGGACAGAAGGGGAAAGAACCTTTAAGAGACTTTATAACATACAATGTAGACACAAAAGAAATCACACAGTCTTTGATCGAGAGCAATAATCAAGGTATGGGTCTTAGCAAGGACAAAGAGAAGGAGAAAAGCGAAGAGACAGTGAGGCATTCGTTTTGGGTGTACGACTTGGAGCGAAAAACATGGTCTTGTGTGTACAAGAACGAGAACATGGGACATCACTATTGGACAAAAATGCAAAATGTGGAACCCTGTCCTCGGTTTGCTCATCAGCTGGTGTTTGATCACATTCACAAGGTTCATTATCTGTTTGGAGGAAACCCTGGAAAATTCAGCGTATCCAAGATGAGATTAGATGACTTCTGGTCTCTTAAGTTGTCAAGGCCTTCCCAGGACTACTTACTAAGAAGATGCAGATATTTAATCCGTAAGCAAAGATTTTGTGAGCTGGCGTCACGTGATCCTTTTGAAGCTCTTCGTTATCTTCAGAATGAGCTTTCAGCCACAGTTGTCCATGACGACCCAGAAGAAGGCAAAGAGTTCCGTCTCTTGGCTTCAAACCTCTTTTCTCGTCAAAATTCGAAACAAGAACGAATGATCACAAATTCAGTGACCATCGAGAACGACGGAAATAAACGGGAATgaaaaacgtcagagcaggggcccggatctcgaaagtcccgaaaatttttcgggcccgaaaagccattcgttaaactgcgatccgattattctgaaaagctggtcttttcatatgctgtaaagggaatgagaattcaaataactgcgaagtttcgtgcctcgagacgccttcgctttgaagatacaaagagaatgacgacacccgaatgtgcccgaaaagtttcgggactttcgagaaacgggccccagATGACGCTTGAGTCACGCTTGTCGTATATCTTCCGGTTAAGCGTGATTGTTCCTTAGACGTACGGAGTGGTTACGCGAAGGTTTAGTTTTCAATTGTACAGGAACAAATTAACAGAGTGAATTAGTTTCAGGGGATTCAAATTCTCACTTTTGAATAAAAAATGCAAATTATTTCTTTAACTCTGTTCTTTTGTTCTTTTACGATTCCCAACGAACTGACCCATTTCCGTCCATACCTGTTTGGGTGTTTGGCTCGTCTCCGAACATGTTGCGAAAGTTTCCGATCATTCTTCGTCGCAGGTCCCTTTGTTTTCGCCAAAGGGTGATAGAATTCAGAGGTTTTCTCTTTTTGTAGAACTATTGCAATAGCTTATAGAAACACTTCAAAATACATTTTTTTCCAGATGTCACATGAGCCTCTTTTAGGAAACAAATTCAAGCGTTTGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RB35	Muskelin OS=Pongo abelii OX=9601 GN=MKLN1 PE=2 SV=1
Q99PV3	Muskelin OS=Rattus norvegicus OX=10116 GN=Mkln1 PE=1 SV=1
Q9UL63	Muskelin OS=Homo sapiens OX=9606 GN=MKLN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004304 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052456 all species →	Family	CTLH complex component protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15526 all species →	MUSKELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23337	MKLN1; muskelin	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.