Gene detail

Detailed information of aawi_s0321.g14.t1 in Acropora awi

Genomic Location: sc0000321_pilon:464777...472945
NR annotation: KXJ21442.1, Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0321.g14.t1

ATGCACTGTGATATCGAAACAAGACGTGTTACTTCGTCTATTTCTGATGCTGGTATTTACATCTCTGGACTAGTGAATCACCAAATAGTCCCGATTATGCTTGATACAGGTGCAACCGTGAGTATGGTGAGTGAGGAATTGTGGAGGAAGTGTGGAGGATATTCAAGCCTTTTAGCTGTGGCTGCAACTCTAACAGCTGCGAATGGCAACCAAATTGAAGTTCAGGGTCAAGCAGAGGTGAGGCCTCGCATCTCCAAGGATGGAGATGCTCCTGTACGTGTTGCTAACTTTACAGACAAACCAATAAAGCTGTCAATTGGTCACGTAATTGGATTCTACCACCCACTTAGTAGTTTGAATAGTGAGACCACTTCAAGTAAAGTGGGTGTGAGCGTATCACAGGACTCCCAGCAAAAGTGTTCGAACCAGACTGGGGATACCGAAAGCAGAGGAAAAGAATCAGAGGAGATGGGCACGGAGAGAGATGGTCACAAAAATGAAGATTCTTTCTGGCGTCCAAACCTCTCCAGGGGCGTCAAGGAGTATTGCAATGACTGCCTGATTTGCGCCAAAAGCAAACCACGTAGGAAACCCAAGGCACCGTTGCAGCCCATCCCTTCTGAATACCCCATGCAGAGGCTGCACATAGACATAGTGGGACCACATCCGCGAACCCAGCGGGGGAGCCGTTTCATCCTGACTGTGCAATGTAGCTTTACTAAATGGGTGGAGGCATATACGATCCCAAATCAAAAGGCTTCCACCTGTGCTAAAGTTCTCGTTAAGAACTGGATCTGTAGGTTCGGAGTACCAGACAGCATGCATTCACATCAAGGAAGAAATTTTGAGTCCACAGTGTTCCAGGAAACGTGTATACTGCTGGGAATCAATAAGACAAGATCCACAGCTTACCATCCCGGAGGAAATGGACAGGTCGAGGATTTGCATTGGACTATGAAGAGCATGCTTACCGCAAGGGCAGAACAGCAACCTGGTTCTCGGGAGGGGCAGTTGGATTTCTGCATGATGGCGTATCGAAGCAGTGTTCACGCGTCGACCGGACATTCTCCCTTTGAACTCATATTCGGCCATGAGATGCGAATTCCTTTAGATGTGATGATGGGAAATGCCGATGAGACTGAATCAACTTACACCAAGTTTGTTGTTGACCTTCGTGAGAGGTTGATACAGGCCCACCAAGATGTGAGGGAAAAGCTGAAAGTAGCCCAGCGTCGTCAAAAGGATGCCTTTGACAAGGGTGTTAAGTATACCGTGTACCAGCCAGGTGACCTAGTCTTGCGTTTTAGCTCTCAACTAAAGCCTGGCGAACCGAACAAGTTTCATCGTCAATGGGAGAGTCCGTATGAAATCGTGGAACGTGTTTCAGAAGTAACCTACCGAGTGCGAAGGAGGGGTCGCCTTTCCAGGCGTTCATCAGTTGTTCACTTCAACAATTTGAGGCTGTACAAAAGGGCAGCCGATGTTAGCCATGAACATGGAAAACCCGCAGACAGTGTTCAAAACCACGCAGACACCATTGGGGGTGTTGGTGGCCAAACCTCGGTTTCTGACAACGAGGAGAATGTCTTGGAGTCGGAACGAAAGGGTGATTCCGCTCCAGCGGAGGGACCTCAGGAGACAGCAGATGAGTCTTCCCTGCCTGGACATTGCCTCGAAGAGAGAGTTGAAAGTTTCCTCGACCCTTCTAACGAACAAGAGCTCACTGACCAGTTTAGTGATACCTCTAATCCCTCATCTGGCTTTGAGGATTCTGAATCGCATCTGCACCAAACACCTCGCCCTTCACGGGTGCGAAAGCCACCTGATCATTACGGGGATTGGTTGTTGAACAGTGTCAACTCAGACAAATTGTTAGTGGAACTCCTCCGTCGTGTTGTTGATCTTAAGTCATTCCACAGTTCGGAAAGACAGAGGATCACAAAGCTGAAACCTAAGCTATTAAAGAAAGCCCGAGTCCTTAGGGAAAAGTTGGAAAAGAAAGTTTAG

Transcript

aawi_s0321.g14.t1

TGCCGTCAGCTGGGTCACTTTGCGCGGGACTGCCCTGCTCAGCCAGCAACAGTACAATCACGGGAAACGGTTTACGGGGCCTGCAAGGGGCCAACCAAACCCCGCACCGGCGATAAATGGGCCCCCACCTGAAGTAAACAATGACATGCACTGTGATATCGAAACAAGACGTGTTACTTCGTCTATTTCTGATGCTGGTATTTACATCTCTGGACTAGTGAATCACCAAATAGTCCCGATTATGCTTGATACAGGTGCAACCGTGAGTATGGTGAGTGAGGAATTGTGGAGGAAGTGTGGAGGATATTCAAGCCTTTTAGCTGTGGCTGCAACTCTAACAGCTGCGAATGGCAACCAAATTGAAGTTCAGGGTCAAGCAGAGGTGAGGCCTCGCATCTCCAAGGATGGAGATGCTCCTGTACGTGTTGCTAACTTTACAGACAAACCAATAAAGCTGTCAATTGGTCACGTAATTGGATTCTACCACCCACTTAGTAGTTTGAATAGTGAGACCACTTCAAGTAAAGTGGGTGTGAGCGTATCACAGGACTCCCAGCAAAAGTGTTCGAACCAGACTGGGGATACCGAAAGCAGAGGAAAAGAATCAGAGGAGATGGGCACGGAGAGAGATGGTCACAAAAATGAAGATTCTTTCTGGCGTCCAAACCTCTCCAGGGGCGTCAAGGAGTATTGCAATGACTGCCTGATTTGCGCCAAAAGCAAACCACGTAGGAAACCCAAGGCACCGTTGCAGCCCATCCCTTCTGAATACCCCATGCAGAGGCTGCACATAGACATAGTGGGACCACATCCGCGAACCCAGCGGGGGAGCCGTTTCATCCTGACTGTGCAATGTAGCTTTACTAAATGGGTGGAGGCATATACGATCCCAAATCAAAAGGCTTCCACCTGTGCTAAAGTTCTCGTTAAGAACTGGATCTGTAGGTTCGGAGTACCAGACAGCATGCATTCACATCAAGGAAGAAATTTTGAGTCCACAGTGTTCCAGGAAACGTGTATACTGCTGGGAATCAATAAGACAAGATCCACAGCTTACCATCCCGGAGGAAATGGACAGGTCGAGGATTTGCATTGGACTATGAAGAGCATGCTTACCGCAAGGGCAGAACAGCAACCTGGTTCTCGGGAGGGGCAGTTGGATTTCTGCATGATGGCGTATCGAAGCAGTGTTCACGCGTCGACCGGACATTCTCCCTTTGAACTCATATTCGGCCATGAGATGCGAATTCCTTTAGATGTGATGATGGGAAATGCCGATGAGACTGAATCAACTTACACCAAGTTTGTTGTTGACCTTCGTGAGAGGTTGATACAGGCCCACCAAGATGTGAGGGAAAAGCTGAAAGTAGCCCAGCGTCGTCAAAAGGATGCCTTTGACAAGGGTGTTAAGTATACCGTGTACCAGCCAGGTGACCTAGTCTTGCGTTTTAGCTCTCAACTAAAGCCTGGCGAACCGAACAAGTTTCATCGTCAATGGGAGAGTCCGTATGAAATCGTGGAACGTGTTTCAGAAGTAACCTACCGAGTGCGAAGGAGGGGTCGCCTTTCCAGGCGTTCATCAGTTGTTCACTTCAACAATTTGAGGCTGTACAAAAGGGCAGCCGATGTTAGCCATGAACATGGAAAACCCGCAGACAGTGTTCAAAACCACGCAGACACCATTGGGGGTGTTGGTGGCCAAACCTCGGTTTCTGACAACGAGGAGAATGTCTTGGAGTCGGAACGAAAGGGTGATTCCGCTCCAGCGGAGGGACCTCAGGAGACAGCAGATGAGTCTTCCCTGCCTGGACATTGCCTCGAAGAGAGAGTTGAAAGTTTCCTCGACCCTTCTAACGAACAAGAGCTCACTGACCAGTTTAGTGATACCTCTAATCCCTCATCTGGCTTTGAGGATTCTGAATCGCATCTGCACCAAACACCTCGCCCTTCACGGGTGCGAAAGCCACCTGATCATTACGGGGATTGGTTGTTGAACAGTGTCAACTCAGACAAATTGTTAGTGGAACTCCTCCGTCGTGTTGTTGATCTTAAGTCATTCCACAGTTCGGAAAGACAGAGGATCACAAAGCTGAAACCTAAGCTATTAAAGAAAGCCCGAGTCCTTAGGGAAAAGTTGGAAAAGAAAGTTTAGTATTGAGCTGTCCCCCATCATATTATTATTGAGACTGTTTATAGTTGTCGTTAAATTTAGCCTCTTTTGGTCGCCCAACAGAGCGCAAACCATGTTCGAGTTCACCAAACAAAATCATCTTTGCTGCTCTAACATCTTCCATACGGCCGACGTGGCCCAACCATCGTAAACGAGACTTTGCAAGTAGAATTTCAATATCGTCGATGTTAGCTCTGGACAAAACTTGTTCATTGCTTACATAGTCGTCCCATTTGATTTTCATAATCGAACGAAGATGCCGTTGCTGGAATGTACGAAGTTGATGAATTTCGTACGAATAAAGAGTCCAAGTCTCACTACCGTACAAAAGAATTGGTAGTAAACACTGTTTGTATACTGCGATTTTAGTTGAAATTGTCAGATCGCGGTTGTCGAAGACTCTATGTCTTAGCCTACCAAAAGCACTAGACGTTGCTTGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan