Gene detail

Detailed information of aawi_s0331.g14.t1 in Acropora awi

Genomic Location: sc0000331_pilon:143756...157210
NR annotation: XP_029206233.2, nucleolar RNA helicase 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0331.g14.t1

CATATTTGTGACCTTCGTTCATGGAACTTCAATCTGTAAAAAAACGCAAGAGCGCCAAGAAAGAAAAGAAATCATCAAAAGGAAAAGCCAGCAAGGGTGAGGCCAGAGATTTCAAATTAAAACTCCAAAATGGCCAGTCCAGTAAGAAGAGGGGTGCAGACACTGCTAATGGGATTGAAGAACCTTCACCAAAGAAGCAGTGCAAGTCAGCGAAGAACCATGTACTTATTAAAGACCAGGCTACCCAGCCTTACGAATTACCAGTTGCCTAAAGCATTCTCCCTTTTGAAACCTGCTGAAAAGGAAGAAGAAACAGATGTAAAAGATTCAGGAGATTTTTCCAAGTTTCGACTGTCAGAAGACACTGTTCAAAAGCTTGAAGGCAAAAATATCAACTATCTGTTTCCCATCCAAGCTGAAACTTTTGACTATATATATGATGGGCTTGATTTGATTGCTCAAGCAAAAACTGGGACAGGGAAGACGTTGTCATTCGTGCTACCATTAGTGGAAAAACTCAGGTTGGAAAATCTCACTCACAAAAGAGGGCGGGCACCAAAGGTGTTAGTGTTGGCTCCTACTCGAGAACTTGCCAAGCAGGTTGGGGAGAGTTTTGATTTTCTGAGGTCAGATCTTTCAGTACATTGCATGTATGGAGGAGTCTCTTATGGACCACAGGTGGCGGCAATAAAAGCTGGGCTTGATGTAATAGTGGGAACACCAGGAAGAATTCTTGATCACATGGTCAATGGAACTCTTGATCTCTCCCAGCTGAAACATGTTGTTATTGATGAAGTTGACAGGATGTTGGACATGGGGTTTTCACAGTCGGTTGAAGATATCTTAGCAGAGTCATATAGGAGTGACGACACAGAAAAACCGCAGACTCTCCTCTTCAGTGCAACCCTACCACCATGGGTTCAAAAAACAGCAGAGAAATATATGTCTGAAGACAAGAAGATAGTGGATCTCATTGGAGACCAGGAATTAAAGGCATCAGAAACAATACAGCATCTTGCCATCAAATGTTCCTATCAAGCCAGAGCATCAACCATAAGGGATGTTGTACAGGTTTACTCTGGTGCCCACAGTAGAACACTAATCTTCACAGAAACAAAGAATGATGCAAACAGTTTAGCTTTGAGTTCTGTTTTAAAACAGGACACTCAAGTTTTACATGGAGATATTCCCCAAGAACAAAGAGAAATAACTCTAAAAAGTTTCCGTGAAGGAAGGGTTCGTTGTCTGGTTGCCACTGATGTTGCTGCAAGAGGCCTGGATATTCCTGAAGTTGATCTTGTTGTTCTCAGTGAGCCACCAAAGGATGTTGACACATATATCCATCGAGCTGGAAGAACAGGTAGAGCTGGTCGCAGTGGAATTAGCGTTGTGTTTCACAAACCAGATCAGCAAGAGTTTCCGTGATGGAAGGGTTCGTTGTCTGGTTGCCACTGATGTTGCTGCAAGAGGCCTGGATATTCCTGAAGTTGATCTTGTTGTTCTCAGTGAGCCACCAAAGGATGTTGACACATATATCCATCGAGCTGGAAGAACAGGTAGAGCTGGTCGCAGTGGAATTAGCGTTGTGTTTCACAAACCAGATCAGCAAGGTCAGCTGCGTGCAGTGGAAAGAAGAGCTGGAATCAAGTTCAAATTCATTGGACCCCCTCAACCAGCTGATATTATCAAGGCTTCTGCTGCTGATGCCCAGAAGTTTGTAGAGTCAGTTTCTCCGGAAGTTCTTGAGCTGTTCCGTGAGGCTGCTCAGTCACTGGTGGATAAAATTGGTGCAATAGATGCAGTGGCTGCTTCCTTGGCTCACATTTCAGGAACAAAAGAAATCATATCAAGGTCTCTCATAACTGGAAAAGAGGGATTTACAACTTTCTTGATGAAAAGCTCGGTAGAGTTCATGGGGCCAGGCTACATGTGGCGTGCACTTGAAAACAATGTGCCAGAGATAAAGGAGCAGATTGAAGTTTTGAAACCTTGTAGTGATAGAAAGAGTGTTGTGGTAGATGTACCAAGTATCCATGCAAAAGCATTTGAGGAATACTGGTCAGATGTTGGAGGGATTAATAGTATCACTGTAGAAAAACCAAGTCAGCTCCCAGAACTTTCTGAGAGACAACGGTTTGGGCAAATGGAAAGAAGACCTCACTTTGGGGAAAGATATAGTCAAGGACGAGATGTCTTCCAGAGGTACGGGAAAGGGCAGTTTTCATCAAGGAATGGTTATGGTGGAAAAGCATCATTCAAGAAAGATTTCAAGAGTAGTAATTCATATGGCCAAAGAAGAAACAACTTTGCCAATGGCAATGGTAACTTTCATAGATTTGATTCATGGCTTGAATAGCAATTCAAAATATGATTATTCTTATTCAGGGAACTCTTCTAGTGTAACAAGTTTTCTTCCAATCTTGTACAATTGAAATTACTCTGTGAATTTACTGAAGGCACATTGTACTTAACACATAACCATCTTGGTAGATGGTGACTTAGCTGTTCAATAAAATAAGGTACTTCGGTCATGGTGACAAAAAACCTGCTGCACAATAATGTTTGTGTTTAAAGGAGGGCAAGTAAACAGTTCTTTTACTCTTAAGCAATAGAAATTAACAGTGACTTGTACCTTGTGTGGAACACACATCTTTTTAATGGCTGGCCATTTTGGTATCCACTATTGCAAGCTGAACTTATGTGTATAATTTTGTTTTTATGCAATCAATCTCATTTGCTTTGGTAAGGAAAACATGGTGCTGACAAACTTGAAAACTATGGATAAATTAATATCCATGGCTGTTTTTGTTTTTGCTAATCAAACAAGGAAGGCTATATAGCCAAGGTTTTACTTTGTATGACTAAGAGCTTTGTTTTTCCCATGTTGAAAAAGTCAAAAGTGACTTTTCAACTGTTGAATTATTTAAAAGAATCCACTACGTATGGGACAAACA

Protein

Uniprot

Uniprot term	Description
Q9BQ39	ATP-dependent RNA helicase DDX50 OS=Homo sapiens OX=9606 GN=DDX50 PE=1 SV=1
Q99MJ9	ATP-dependent RNA helicase DDX50 OS=Mus musculus OX=10090 GN=Ddx50 PE=2 SV=1
Q9NR30	Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08152	GUCT	GUCT (NUC152) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050547	Family	DEAD box ATP-dependent RNA helicases	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012562	Domain	GUCT	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47963	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan