Gene detail

Detailed information of aawi_s0373.g5.t1 in Acropora awi

Genomic Location: sc0000373_pilon:185383...194975
NR annotation: PFX11422.1, Transposon Tf2-8 polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0373.g5.t1

ATGAAGCTTGACTTGTTAGGACTGAAGTGGGCAGTAACCGAAAAATATCGGACCTACCTCCTTGGTTCAAAATTTGAAGTCTTCTCTGACAACAATCCTTTGAAGTATTTGCAGACAACTGCCAAGCTTGGTGCTTTGGAGCAACGATGGGCAGCTCAGCTTGCTTTATTTGATTTCACCATCAACTATAGGAGTAGAAGATCAAATGGAAATGCTGACGCTTTATTACGTCAACCCCATGGACCAGTGCCCGACGAAACAGACGACTCCAAAGAAGATGATCTACTACACATTGAGACCATAGTCACAATAGCAACTCCTGTACCACCCAATCTGAATCACGCAATTGTAACGACACCAATTCCGATAGAAGTGAGACGAATGGCAGTACAGGAACCAGACCATAACTTACCTGCAGCCAATCAGTTACCAGATAAGAATGACAAGTTACTTCAAGATGATCCAGTGGCTGCTACAACATCGTTTCCCACTCATACGAAGGACGAATTTATCAACATGCAAAATGCAGACCCCACAATCAAGGAATTTCTGAAGTTCTGGGAGAGAAACATGAAACATACCTTTGCAGAAAGGAAACTGCTTTCCCCCCAGTGTACCAAGGAAGAAATTTTTGAAAGTGAGGTTATCGCTGAACTTTGCAGACTTTATGGGATTAAGAAGACACGAACTACACCATATCACCCTCAAGGGAATGCACAGTGTGAAAGGTTCAACAGAACAGACAATCTTGCCTCAGTTTACACAGTGGAACCCATAGACAGTACTGGTGAAACTAAGAAAGTGCATCGGAGTAACCTGACAATAAGCACAGTCCGTCCAAACAAGGAACAGAAAGACCATAGAACCCAATCTACCAAACCATCGTCAACAGTTTCCAGTATCCCAGCTGATGAAGGAGACAATTCAGACGAGGAGTTTGTGTTAATTGTCCCAAAGGAATACACAAGCCTCCCCAGttggttggagcgtcgcaccggtttcgcgaggtcacgtgttcaaaccccgttgaagtcccgaattttacaggcttccatacgcaattgcaaatattgcgttcataactgcgaggagcagacacggttaaagtctcagaaaaaatgctatcgtgttctaagacgttggcaaaagaggcacccatctgatgcaacataccaacgcttggcatttgcattgcagcatcccactgttgatcgagtagatgtggctgtcaagtactgcggtcttcaattagaaaaggtgtcttcagaggaaggacGAACATCGGGTCTTTTGGATAAATCTTCGGATGAAGGAGAATATGATGTTGACGAGGGAGAAGAAAGCAATGAAGAAGAGGAAGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAAGGGAAGAAGAGGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGGAGAAGAAGAGAAAGAAGAGGAGGAAGAAGAAAGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGGAGAAAAAGAGGAAGAAGAAGGAGAAGAAGTGGAAGAAGGAGAAGAAGAAGGAGAAGAAGAAGAGGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAAGATGAAGAGGAGGAAGAAGATGAAGCAGAAGATGAAGAGGAGGAAGAAGAAGAGGAACAAGAAGAGGAAGAAGAAAGAGAAGAAGAAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAAGGAGAAGAAGAAGAGGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAGGAGGAAGAAGAAGGAGAAGAAGAAGAAGATGAAGAGGAGGAAGAAGATGAAGCAGAGGATGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGAAGAAGATGAAGAGCAGGAAGAAGAAGAAGATCAACCGCATTAG

Transcript

aawi_s0373.g5.t1

GAGACCGAGCGAGAAGAACCCAAGAAACTATAGCTCCATGAAGCTTGACTTGTTAGGACTGAAGTGGGCAGTAACCGAAAAATATCGGACCTACCTCCTTGGTTCAAAATTTGAAGTCTTCTCTGACAACAATCCTTTGAAGTATTTGCAGACAACTGCCAAGCTTGGTGCTTTGGAGCAACGATGGGCAGCTCAGCTTGCTTTATTTGATTTCACCATCAACTATAGGAGTAGAAGATCAAATGGAAATGCTGACGCTTTATTACGTCAACCCCATGGACCAGTGCCCGACGAAACAGACGACTCCAAAGAAGATGATCTACTACACATTGAGACCATAGTCACAATAGCAACTCCTGTACCACCCAATCTGAATCACGCAATTGTAACGACACCAATTCCGATAGAAGTGAGACGAATGGCAGTACAGGAACCAGACCATAACTTACCTGCAGCCAATCAGTTACCAGATAAGAATGACAAGTTACTTCAAGATGATCCAGTGGCTGCTACAACATCGTTTCCCACTCATACGAAGGACGAATTTATCAACATGCAAAATGCAGACCCCACAATCAAGGAATTTCTGAAGTTCTGGGAGAGAAACATGAAACATACCTTTGCAGAAAGGAAACTGCTTTCCCCCCAGTGTACCAAGGAAGAAATTTTTGAAAGTGAGGTTATCGCTGAACTTTGCAGACTTTATGGGATTAAGAAGACACGAACTACACCATATCACCCTCAAGGGAATGCACAGTGTGAAAGGTTCAACAGAACAGACAATCTTGCCTCAGTTTACACAGTGGAACCCATAGACAGTACTGGTGAAACTAAGAAAGTGCATCGGAGTAACCTGACAATAAGCACAGTCCGTCCAAACAAGGAACAGAAAGACCATAGAACCCAATCTACCAAACCATCGTCAACAGTTTCCAGTATCCCAGCTGATGAAGGAGACAATTCAGACGAGGAGTTTGTGTTAATTGTCCCAAAGGAATACACAAGCCTCCCCAGttggttggagcgtcgcaccggtttcgcgaggtcacgtgttcaaaccccgttgaagtcccgaattttacaggcttccatacgcaattgcaaatattgcgttcataactgcgaggagcagacacggttaaagtctcagaaaaaatgctatcgtgttctaagacgttggcaaaagaggcacccatctgatgcaacataccaacgcttggcatttgcattgcagcatcccactgttgatcgagtagatgtggctgtcaagtactgcggtcttcaattagaaaaggtgtcttcagaggaaggacGAACATCGGGTCTTTTGGATAAATCTTCGGATGAAGGAGAATATGATGTTGACGAGGGAGAAGAAAGCAATGAAGAAGAGGAAGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAAGGGAAGAAGAGGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGGAGAAGAAGAGAAAGAAGAGGAGGAAGAAGAAAGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGGAGAAAAAGAGGAAGAAGAAGGAGAAGAAGTGGAAGAAGGAGAAGAAGAAGGAGAAGAAGAAGAGGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAAGATGAAGAGGAGGAAGAAGATGAAGCAGAAGATGAAGAGGAGGAAGAAGAAGAGGAACAAGAAGAGGAAGAAGAAAGAGAAGAAGAAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAAGAAGGAGAAGAAGAAGAGGAAGAAGGAGAAGAAGAGGAAGAAGAAGGAGAAGAGGAGGAAGAAGAAGGAGAAGAAGAAGAAGATGAAGAGGAGGAAGAAGATGAAGCAGAGGATGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGAAGAAGATGAAGAGCAGGAAGAAGAAGAAGATCAACCGCATTAGtgtccaagcctttggaagatcttgttgacgacccctctaattccctggatgagatctggcaacgtttggatacacctactgcaggaattggtaattacgaaaacatagctaaacattacggctacaagttctccacagtacgattcagattgaaaacatctccggatggtccgtccaaagctatgattttagccataatggatgaacaccctgatgtcaccgttgagagctttgcaaaagtcgtaaagcaagcgagacgaaattatgttgccaaattgctgaGggagttcgatcgcaagtgatagaatacatctttgtaaatttctttgacgatttaatgtaatgttcgtcttcgatttacGcattactaagacgCaAtaaattttcttgagtttataacatttattaactagacatacacttagttttcatattttctactgtgtattagttttaatcaagataaaacagctagtaaagaacttttaagtct

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan