Gene detail

Detailed information of aawi_s0446.g1.t1 in Acropora awi

Genomic Location: sc0000446_pilon:2976...31375
NR annotation: XP_029194909.2, uncharacterized protein LOC114960660 isoform X1 [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0446.g1.t1

ATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGTATACGTACCACAGCCAAAGGATCTTTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCAAAGGACAAGTTTATCGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTTGATAAAGATGGAAATGGTCGTATAGATTGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGTTCAACCTTGATGGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATTCAAGCCAGAGAAAACCATCCTCACTATGAGGGTGACTACAGGACATCAGCTGATGTAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTCTCTCAATTCAGTGATACTACAAATGGCAAATTGTCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTGATACTGGACTCGGTGTTTCAGCACTGCAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATTCTCCTATGCCACCGTCGACGGTTGCATCGACGCATCAGGGAACGAGACGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGAAGATGCGTTCAGTGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGTCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAAGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCCTTGTGGACTTTTAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTGTGGCAATATGAGCTTGACACCTCAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTGTTGGTGCTGGTGGTATGTGGGTATATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCGGGGCTGTTTGGACATTCTGCGATTAAGATTGGAGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAATACCATGTGGCGCTTTGATTTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGTATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCTTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCTATGTTACCCAATACAGTGGCCAAATTTGCTTTCAATAAACCTGATAAGAATCGTCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACATTATCGGATGATGCCTTACACGATCCACATGATAGCAAAGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTCGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTTCTTGGAGGCAAGACGCGTAA

Transcript

aawi_s0446.g1.t1

NNNCTTTTTGAAGGCGCTTTTTTGCAAACCAGGTGCTCAAGTCGAACTGTAAATAGAAACAAGCTCATGTTGTGGGTGAACAATCGAATAGGTTACATATCACACTCGGTTTGATTTAACTCACGTTTGAATCAAGCTAAACTCCAACGAACGTAAGCCTCCGTAACCGGATCTTTTGTTTCATCAACATTTGCTCGACTTTCGATATGAATGAACGCCTTTTTTATTGGATTTGCAAATTATGGAAACCGGGGGACGAAGGTTGTACCAACATTTGGAATATTTAGCTTATTAGCGCTTCACTTGCCCTTTATGCGTCTACGGTTATCTATTGACATACGAGAGCGATCAATTAATTAAGAGCTATATGCCTCTGCTGTAAACGGCATGACATTTTCAAAGCTATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGTATACGTACCACAGCCAAAGGATCTTTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCAAAGGACAAGTTTATCGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTTGATAAAGATGGAAATGGTCGTATAGATTGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGTTCAACCTTGATGGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATTCAAGCCAGAGAAAACCATCCTCACTATGAGGGTGACTACAGGACATCAGCTGATGTAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTCTCTCAATTCAGTGATACTACAAATGGCAAATTGTCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTGATACTGGACTCGGTGTTTCAGCACTGCAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATTCTCCTATGCCACCGTCGACGGTTGCATCGACGCATCAGGGAACGAGACGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGAAGATGCGTTCAGTGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGTCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAAGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCCTTGTGGACTTTTAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTGTGGCAATATGAGCTTGACACCTCAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTGTTGGTGCTGGTGGTATGTGGGTATATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCGGGGCTGTTTGGACATTCTGCGATTAAGATTGGAGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAATACCATGTGGCGCTTTGATTTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGTATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCTTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCTATGTTACCCAATACAGTGGCCAAATTTGCTTTCAATAAACCTGATAAGAATCGTCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACATTATCGGATGATGCCTTACACGATCCACATGATAGCAAAGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTCGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTTCTTGGAGGCAAGACGCGTAACCACACCGAGATGGGAAGAACACTTGACTTTTGGCGATGTGACATCGACCCAGTGGAGAAGTCCACACAGGGAATGGAAAAAATAATCGCTGTCAAAAAGAACTCAGCAGAAAAATCCAGCAATCTTCCCCATATATACTTGAATCATTCTTCATGTTCCGCTGACCTAGATGACCGAGGGACTCAAGCAGTTGGAGGTGACCTGGAATTGGCCGATATGTCGGATAGTGATACTCGGAGTGTCGACCTTTTAATAGACGACATCGACGGTTACGAGAGGACTTCACGAAGCTTTCCGAAAGTTTCCATATAAAAATATCAACCAAAAATGTAACTTTTTCGATGCGAATCAAATAAGTCATATAAAGTCGACGTCAACGAAAGACGTGAGAATCGAACAGCGTAAAAGTGCAAGTGAGACTGAGCCGGAGAATTTTTGAGTTATTAGAAAGCTACTGTTTCTGTGTATGACTCGTGCACAGAATTGTTTGCTTAAGTGGATAACAAGACGACTTCTGGCTCAATTAAATAAGCTCAAAATGCACTTACTGTACACGAGTGATTCATCATCATTGTGATAACAATGCAATTGGGCAATTTTACTGCGTCTCTCTTTTGTAAGCTTTGCTCCTTTTATGCGTAATCATTCATTGTCAGAAGACTGTTCTGAGAGGGGCATTTCATTCAATTAGCAAGATGTGTAAACAGCCAAAGCTTAAAATTGACGGCGTTCTTACATTGCCAATGATAAAGTCAGTATTTAAAGATTGCAATTGATATATTTGAATGTATGGAGCTAATAATTATCAAAAAGAACAATTTGTAAGCAGAATATTGGAACTGGTTTACTGTAAATAAAACCAAGTTCATGGTATTCATAACTAAATAGAAGTGGATTCGGCTAAAATTTGTGTATGATTTTGAGGAGTGCTTCAGTGAGATAATTTGAGTGATCAACTGTTTCAGCTCAACCATGTCTTTGCTAACTTACCGGCCTTTGGTTGTTTTCTTGTAGCTTCAAAACAGTCACAGTCAAATTTGGTAAACCGCATAGCGCTGTTATCTTGGTACGTTAAACTTCCTCGTTTCGAACCCGGCACCAACACTTCAGATCCGTGGATTGTTGTTATGCCGTTCTCTGTCTGCGTAGTATTTTTTCTATGAACTTGAGATGATGAAAATATTTTTCCTGAGCTGCGTTTTTTGGCCCTGCATAATTATTTAATAAGCACAAATTATGAACGAATATAGACTGATATGCAAAAGAACTTACAAGATGTATAAGATAAATAAAATTGATTTTGAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86A72	Recoverin family protein DDB_G0274781 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274781 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003623 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13405 all species →	EF-hand_6	EF-hand domain	Domain	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13964 all species →	Kelch_6	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0446.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →