Gene detail

Detailed information of aawi_s1528.g1.t1 in Acropora awi

Genomic Location: sc0001528_pilon:1...6935
NR annotation: XP_015749406.1, PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MutS-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s1528.g1.t1

TAACAAGCTGATGGCTGGGTTCCCTGTGAGATCCTTAGATAGTTGGCTTACAACCCTTGTTCAGCAAGGTTTTCAGCTGGCAATTTGCCCTCAACAACCCAGCAAGACACCGGGCAACTCACGGTTGATCCACCGAGAAGTTGTGCGATTAGTTACCCCAGGAACACTTCTTGAACCTCTGAACCCAGATGCAAATTATCTGATGAGTATTGCCGAGGGACCTGATTCATCCTTAGGTCTTGCTTGGCTCGATGTGTCCACCGGAGACTTTCACCTGGGCGTGTCATCCCTTGAGAACATAGAAGAGGACTTGTCATAGGTGAACCCGGCAGAGGTGTTGATGGCGGAAGACCATCTGAAAGATTGCAAAGTAAAACACAATCACAAGACTGGATTGACCATGAAAAGGTCTCCATTGGAAAAGGTTAAAGACTTTCATCTTACTCTTGTTCCGTCGGAGTGGTTCGATATAGAAGCGTCAGGGCATAATGACAGTTCTGTTCCTGGGCTTTTTTCATCAGTGATCTCATCGCAGTTCTCTTCGTTAGAAAAGGTTGCAGGAGCGGCGCTCTTAAAATTTGTGTCTTACACCCAAAGAGAAGTTGCTCCCCTTGTCAGCCAACCTTCGAAATTTTCCCAGGCAACTCACATGGCCATAGACTCTAATACACGGAGAGCATTGGAACTGACCACGCCCTTAATGAGCACAGACAAAAAAGCTACACTTTTTGGAGTTATGAATAACACAGCCACAGCATCAGGACAAAGATTGCTGTATTCGCGATTGTGTGCGCCGTCCACGGAAGTGCATGTCATCCAGTCGAGACTCAATACTGTGGAGTTCTTTAGCGTCAACAGGCCTCTCACTGAAGAGCTGAGGAAAAACTTAAAGCTTTGCCCAGATATTGAGCGTAAAATGCAGAGAGTCGCCACTGGAATTGCCAACTTAAGCGACCTCCGCGCCATTCATGGTGCATTGGTCATATACAAGAAGATTCTTTCTCATTTATATGACTCCCACTTTGATGTCAATCTTCAGCCTATTGATCATTTATTAATGGCAGATTTTAGTCTGTTGGATGGTTTGTACAATGAGCTGGACACAGCTGTTGGGCAGATCATATCTGAACACAGTGTCATGGAAGGCTATTCAAATACAGCCGATGAGATTAAAGAGAGACTGAATGAAAACACAAGACAAGTCGAGCAATTacgggatttctacagAGAGAAGCTGAATATTCCTAGGCTGGTTATAAACAGTCACAAATCATTCATAAGAGTTGTTGAAATCCCTTTAACAAAGCAAGCAGCTCTGGAAGGAGATTCAGATTTTGTTTTGTTGGAAGCGACTTCAACCAAAGCTCGCTACAGTACTTTGAAACTACAAGAGCTTAACGCGAAGCTCAAAAGTTTACAGGAAGAACATGAACAAGTTCAGAAAGCATTATCTGAAGATCTGTGCAACCAGGTAACATCTCATGCGGACAACCTCAAAGAACTTGCTGTTTCAATGGCTGAATTAGATGTGGCAACCTCCCTCGCCCTGCTAGCCCTACAAAGAAGCTACGTCAAACCTGTCATTGGTTACAATAAGGAGTTTAGTATCAAAGGCGGGCGACATGCAGTAGTGGACATGCTACAGCCTAACAGCTTTGTGAGCAATGATTGCGAGCTGGGGGAAAAAAATGTCTGGATTGTGACGGGACCGAATATGGGTGGAAAGAGCACATTTCTTCGTCAAAATGCTTTGATCGCGATCCTTGCTCAAGCAGGTTCCTTTGTTCCGGCGTTAAATGCTTCAATTGGAATTGTAGACCGAGTGTTTGCGAGAATAGGAGCTAGCGATAATCTTGTCCAGTATCAGTCAACCTTTATGTCGGAGATGTTAGAAACTGCTTTTATCCTGGCACAGGCAACGGACAAATCTCTTGTGGTTGTCGACGAAATTGGTCGTGGAACTTCTATGCTTGACGGCCTCTCTATTGCGTGGTCAGTGATCGAACATCTTCACTCTGCAATAAATTGCCGAACGTTGGCTTCAACTCATTATCATCAACTGGCTAAATTAGCGGAGATTGTACCTCACGTGGATTGCTACCACGTGACAGCAAAGAACGAAAGAGATGGAATAAGCTTCACGTTTAAAGTCATT

Protein

Uniprot

Uniprot term	Description
Q1RJJ5	DNA mismatch repair protein MutS OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=mutS PE=3 SV=1
A8GX86	DNA mismatch repair protein MutS OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=mutS PE=3 SV=1
A8EZG1	DNA mismatch repair protein MutS OS=Rickettsia canadensis (strain McKiel) OX=293613 GN=mutS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR011184	Family	DNA mismatch repair Msh2-type	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0043504	Biological Process	mitochondrial DNA repair	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan