Gene detail

Detailed information of acyt_s0003.g139.t1 in Acropora cytherea

Genomic Location: sc0000003_pilon:1806848...1816267
NR annotation: XP_029191562.2, O-phosphoseryl-tRNA(Sec) selenium transferase-like isoform X1 [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0003.g139.t1

GTAGACTTGCCAGGTACATTGCAAGGAACGAGATGTTTTCAGGGAGCTATGAAGCTTGTGGCAAAATTATCCCAAATGCGTATGTTCAGCAAGCTCAAAATGCTCGCAAGAGTCGAGAAAACCAAATAAGAATATTTCTGGAACACAAAAAGTGGCCTTTAGAGGGATGGGATGATATCAGTGTTGAGCTTCTGTTGCATGAGCTGTCCATTATGGACAGCAATAACTTTCCAGGAAATGTTGGTGCAGGTGAAAGAGAAGGGAGAGTCATTTCATCCTTGGTGTCAAGAAGACATTTTAGGTTAAGCCATGGAATTGGCAGGTCAGGTGACATAGCGGCTGTACAACCCAAGGCTGCTGGTTCGTCTTTGCTAATGAAACTTACCAACTCTATGGTATTGGATGCTATTAAAATGGCAGGTGTGAGGTCTGTTAAAGCTTGTCTTCTGTTACCAGTGGCAACTGGCATGACTTTGGTTATGACACTACTGACATTAAAACAAACAAGGCCTGGTGCCAGGTTTGTGATATGGCCCAGGATTGATCAAAAGTCATGCTTCAAATGTATTCTTACTGCTGGATTTCAACCTGTCATTGTAGAAAATGTTTTGGAAGGCGATGAGCTTAGAACAGATCTTGCAGCTGTGGAAAAGCAGGTTAAAGACTTGGGGTCTGAGAATGTGTTGTGTGTCTTGACAACAACCAGCTGCTTTGCTCCAAGGACACCTGATAGGTTAGAGGAAGTTGCTAAGTTGTGCAAAGAGCAAGCTGTGCCTCATGTTGTAAACAATGCTTATGGGGTGCAGTCATCTAAGTGTATGCATCTCATTCAACAGGCAGCCAGGGTTGGTCGTGTGGATGCCTTTATACAAAGCACTGATAAAAACTTCATGGTTCCTGTTGGTGGAGCCATTGTCGCAGGATTTGATGAGAAGTTTATTGATGCTGTCAGTAAGACAtaccctgGTCGAGCATCAGCCACGCCATCAATAGATCTTTTTATCACGCTCCTGTCCCTTGGATCACAGGGATACCAACGACTGTTACAACAGAGAAAGGAAGTTTACAGCTACTTATCTGAAGGCCTTTCGAGGGTGGCAACAGCACATGGAGAACGGCTTCTTAACACTAAAGGCAACCCTATCTCGCTTGCCATTTCTCTTGAGCGACTCTCGAATGGACTTGAACTAAATGCAGCCGGCGTGACTCAGCTAGGATCGATGCTCTTCACAAGATGTGTTTCCGGTGCGAGAGTCGTTAGCCCTGACACTTCTAAGGAGATAAATGGCCACGTGTTTACTGGCTGGGGTGCGCATGCCAAGAGCTACCGCTGTGCATACCTTACTGCTGCCGCTGCGATAGGGATGGCTAAGGAGGACGTAGACACGTTTTTAAAAAGGCTCGATAGGTGCTTATCGAAATTTACTGCCAAGGAATCGGATGTTAGTGGGAACATTGAAAATACACACGCATGTGAAAACGATCAGGAAGAAACAAAGGATAGTGAAGTTACAGGAATCACAACGGTGAACAGATAGTGTGAATATTAGAGAGAGCTCCATTCAGTGCTGGTCTTGGAGGGTGAAAGAGACACCCAAAAGTTATGGAACGGCCAACATGAAATGCCGGGATCCATAAAGCGAGGATACCCGGGACCTCATTTTGCTGGAGGGAAACGTCTGTCATTTCAACATTTGTCTGCTAATGGTGTTAATGGCTTTCACAGATACAAATTCACACGCAATTGAATGATCTTTCGTTTTGTCACATATGGCACAGTGATTGAAATTGTCAGAGGAATTATGCAGATCTTGAAGGGTATTTGGTGGCGTGGATGCCGTAGCTACCTTCATTTGTTTAACTCGCTGCTGGACGACTGGCAGCGTGTAGCGGCCGGTAAAGACTGGTGCCGGAGTCGGAGTTGTAATCAGTAAATCAAGTGAAAATCAAATCGACAGAATCGAAAGCAGAGTACCGTCTCCCTCGCTTGCAATTAAGTGGAAAATAGTAGATTATCGGAGTCGAAGAATAAACAAATCAAAATGCTGAGCACCAATCGTTGTACTTGGTTGGTTTCTACGCTTTTGTTTGCGGCTCCGATAGGGCAGACACTTTTCACAGGATCATAACATCAAGTCAATTACGGAATCGAAAGACAATGGAACCAATGTGATTATTCTTACTTGCGATTTTGACGATGTTTTAAGTGCTCGTAAAAAAACAGATTTTGACGATGTTGTAATTTCTCGTTAAAAACAGCCATTAGAATCTATGCAAGCCATTCAGAATCGTAGAAAATATTTTTAGTGAGTCGTAAATCACGCTTTGATCTTTCCACGGGCACGTTTTAAGCGTAACTTAGACGGTAACCATCGCGGAATTAGATCACTATCTGCCAGCAATTCTTGCTCTGGTACAGCGCTTTTAGATTTGGCTGCAGAATCAACGTCGCTTGATCTCTGGGAATTTGGGGTAAAAGTAAAGTCGTAACCAGTTGGTCGCGAGATAGAGCGACGAAACGGCAAGTTCAAATTTTCAGAACGGGGAACTCCGCTTCTAGTGCGCCCCTTCATCTCCTCTAGTCCAAGGCGTGGAATTTGCCTGACTAGCTGGTAGGCAGGCGTCTTATGTTTGAAATTCCCTCCTCTCTGAATTAAATCTAGTCTTTCCAAACTCGAAAGCTGATTCCGTGAAGCCATGTATCGGCAAGATCTCACACCATTTTCTTTTCTCTTTAGAGCTTCAAATCGTTTTTGCATTGTTTCCCGTTCTTTCTCTTTCCTTGACAACCAAATCTGTCTTTGTTTCTCCAGGTCTTGAATTTGTTTGACATAACTCTGTCCCAAATATAAATTAGTCGCATATAAGTTTCCAACAGTCCAGGTCGACTGCAGGATGTATGCCTCATAATGAGCGTCGATACAAGGAGCACGAAATTTCTGAAAAATACTCTCGGGTTTTGCGGCCTTCTCTGTACCCATTTGTGCTTGTTAGTTTGCTATATTGCCACTCGGTCCCCTGAATTATGAAGTCTCGCTCTTCCCTATTAAAGATAGTGTTCTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28EN2	O-phosphoseryl-tRNA(Sec) selenium transferase OS=Xenopus tropicalis OX=8364 GN=sepsecs PE=2 SV=1
Q9HD40	O-phosphoseryl-tRNA(Sec) selenium transferase OS=Homo sapiens OX=9606 GN=SEPSECS PE=1 SV=2
Q5RAK7	O-phosphoseryl-tRNA(Sec) selenium transferase OS=Pongo abelii OX=9601 GN=SEPSECS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05889 all species →	SepSecS	O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019872 all species →	Family	O-phosphoseryl-tRNA(Sec) selenium transferase	Interproscan
IPR008829 all species →	Family	SepSecS/SepCysS family	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12944 all species →	SOLUBLE LIVER ANTIGEN/LIVER PANCREAS ANTIGEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001717 all species →	Biological Process	conversion of seryl-tRNAsec to selenocys-tRNAsec	Interproscan
GO:0098621 all species →	Molecular Function	O-phosphoseryl-tRNA(Sec) selenium transferase activity	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0001514 all species →	Biological Process	selenocysteine incorporation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03341	SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase	EC:2.9.1.2	Aminoacyl-tRNA biosynthesis	ko00970	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.