Gene detail

Detailed information of acyt_s0012.g25.t1 in Acropora cytherea

Genomic Location: sc0000012_pilon:526454...536075
NR annotation: XP_015772347.1, PREDICTED: TNF receptor-associated factor 2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0012.g25.t1

CGATAAGGTGGCAAACAGAGAACATAAAGGAATTAGATACACTGTTAAAGGTCAGGAAAAGTTCTATTTTGGTTTTCACGCAATGCCTGGATACAAGCTGTGCAGTTCAGACCAGAAAAGAATTGAACAAAAATATCTGTGCAACTTTTGTGGGTTGCTCTTGAAGAATGCCATGCAAACTGGTTGTGGCCATTTCTATTGCGAAGAATGCCTAGGAAGTCGTCATGTAAGTGACCAATGGAAAATGACTTGTCTCCAAGACCAGACTGAACTTCTGGAATATGAGGTTTTCCCCGATATGCATATAAGAAGGGAAATAAATACATTTGAGGTTTATTGTACGTTCGTGGATGATGGATGCGTCTGGAAGGGAGAAGTTAAGAACTTGGAGCGACACCAACAGGATTGTTGGGCTTGTCCAGTTAGCTGTGACAAATGCAGCAAAGTAGGAATTCCTCGTGGTAAGCTGACAGATCATCAAAGTCCCATTCTGGGGGATTGCAAAGGAATACAGGGCCCCTGTCCTTTCTCACAGATTGGTTGCTCCAAGACAGAGGTCCTCAGCGTAGAAGAAAAGAAAGAACATTTATTGAAGGAAAACATCCATCATAATGTTCTGCTGCTTGAGTTTGCTGTTCGTGTGAGCAAAGAAATGGAATCCGTGCTGAGATCTGATCCCACACTTCTTATCTCAAGACAGCAAGAACTCTTCAACCAGATGCAAATCCACACAGAGACAGAAAGACACCTACAAGAGGAAAGGTTGCAACTCAGCGAGAGGATTACTGCTGTTGAGAGAGAACTGGCGTTATTAAAGACATCGGGTGGTGCAAGTGGGGCATCTTCTCAACGCCTTCCTGATGATGAAGGAAGCTCAGTTCCTGTTGATATCGAAAGAGGAGGGACAGATCAGGAGGCATTGATTGTGGAAAATAATCGCATCGCGATGGAATCATGTCGAGAGGCAGAGAATCTTAGAAGACAGCTTGACAATGTGCAGGACACACCATGTAGGTCAGAGGCCAGGATTGATAACGCATTGGCACTGAGAAATGTTACGTTCGCCGATTTAGAAGAGTACGTAAAAGAGCAAGAGGCTGTGAGATATGACGGTCGCTATACGTGGAGAATTCCCGGATTTGCTCGAAAACGAAGGGAGGCAGTCGATGGGCGAAAGGTTTCCTTTTGCAGTCCGTTCTTCTACTCAAGTCACGACGGATACAAAATGTGTGCACGCATATACTTGAATGGAGACGGCACGGGGCGAGGCACACATATCTCCTTGTTCTTAGTTGTCTTGCCTGGTAATTTTGACGCGATACTGAGCTGGCCATTCAGACCGAGGGTGACCTTCACGCTGGTGGATCAAGACCATGCGGAAGACGTGATTGGTTATTTCCAGTCTCCTTTCGAGGACCCAAGAAGAGCAACCAACATCGCCAACATCGGCTGTCCCACGTTCTTCTCCATCGAGGAACTGAATAACCACGCTTACGTACGCGACGACACCATGTTTATCAAGATATTTGTTGATCCCTCGAAACCATAACATTTCTTCACACAACCCAGTTTTCCATTGTCACATGACATATCCTGTAGAATCCTTATCTTTCATTACTACTAGTAACCTATACTCTTTTTTATAAGAATGTCGTTTTCCGGCTCAGGCTGATTATTCGTATTTTTCTCCTATTTTAGGCTGAAAATATCCTTGTATTATTCTTAAATTATAGCTCTTGACATTTCCGTTTTAGAATTTATTGCGGTGTCAATTACAAGTGTTTGGTATTAAGATCTGTATCGCGTTGCACGTGCTCTTGTTGGAAGGAATGTCACAGCTCTGTACGAGTAATTGTTTATTTTAATAGCGACGTTGAAACAATACAAGGTGGACTATCTTACAATGACTTTGATGGCATCGAAGTAATTTTGGAGCCAAATTGCAGGCAATAAAGCCTAGTCCTGTTTTTGTTTTCGCTAGGTTTTGTTATTTAAAAAAGAAATATTTTGTCGTAATACTTTTTTGCGGTTTAGTTTATGTCTTTTGTGCTGAAGACTGTACATATGTATTGCATGAACCGTTCATCGAACTGTCATTAGCGTTGAACATTTTGCTATACCTAGTGCTGTTTTTTTCATTTTGTTGGCTAGTTTGGTCGTTAAGAGAAAGGAATAATTTTATACGGTTAAA

Protein

Uniprot

Uniprot term	Description
Q12933	TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2
P39429	TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR012227	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03173	TRAF2; TNF receptor-associated factor 2	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala