Gene detail

Detailed information of acyt_s0013.g88.t1 in Acropora cytherea

Genomic Location: sc0000013_pilon:1367244...1376826
NR annotation: XP_044182410.1, MTRF1L release factor glutamine methyltransferase-like isoform X1 [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0013.g88.t1

TGTATTTTGTTGCATTTAATCGTAAAGAACATGCTTTTCAGAGCATTACTCCCTGAAATCTTTGGAACCCAGCGATTGCAATTAGCCAATGTCTTGGCTAAGGAACAAGCATTCAGATTCAAGGTCCAGTTTCGAAATCGTATCTTGTGCGTCCGAACGTTCGGCTCCAAAAACCTCAACGTTTTCACAAATTCGTGGAAACAACGATTAAAAGAAAACAACATACCTGAAGGAAATCTGACGGTGAAATTCATCATAGAACACGTTCTTGGCAAAAAAAGGACTTGGTCTTGGAAGGTTGATGACAATGCCTGCGCTATAACAGAGGAAGAAGAGGAGAAACTAGAGCACTTATTTCAACAGCGATTGAAGAGGGTCCCCTTGCAATATGTTATTGGAGAATGGGATTTTCGTAACCTCACTTTGGAAATGAGGCCACCTGTATTTATTCCAAGACCAGAGACAGAGGAGTTGGTTGAGTTAGTTTCTCGGCATCATTGCCTCTGGAGCGGTGGAAACGAGAATTTTTCATTCCTCGAAGTTGGATGTGGAAGTGGAGCAATTTGTCTTTCGATTCTTACAGAATTTCCGCAGGCTAACAGCTATTGCATTGCGATTGACAAGAGCAAAGATGCCATTGATCTCACAAGAGACAACGCAAAGAAATGTCGCGTTTGTGATAGGATTTCACTAGACCATACTGATGTCCGATCCGTGCTACCAAAGCTTGGTCCCACAAAATTTGATGCTGTAATCAGCAATCCTCCCTATGTTCTTGAAGATGATATGCTACAATTGCAGCCTGAAATCTCAAAATATGAAGATGTTGAGGCACTGTGTGGAGGAAGGGACGGCCTCGATGTTACCAAGGAAATCTTGCGTCTTTCCGCGAAGATACTAAAACCAAATGGTTCTGTGTGGTTGGAAGTTGACTCATCTCATCCGGACTCAGTAAACCAATGGATCCTCAGTCAAGATCTTGGTTTAAAATATTGCGCAACCTTCAACGATTTCGCAAACTGGCCAAGATTTTGTCACATTATCCGACAGTAGTGACCATTGCGTGACTCGTGATTTCAAGTTCAATGGCACGCGGAAAGGAGACAAATTTCTTTGCGTGACATATTGCGTCCACATTTTTATACGCCTGTAAGTTGTGTCCAACACGCTATATTTCCATAATTTTGAGTGAGCAAGGACATAAGGTGCGCAAAGCGTGCATACCTGGTTTGCAATGATCTTCTCTGGTCTTTTCTTAATTTGGAATGTCAAGGATTATCATGTGGGATAAAACCAACGGATGTGAAAGTTGATAGAAAGTGTTTTCCCTTTCGTGTGGTCCAACCATAAGCGTACGTGCCGTGGGAGGAGGGGAGGGGGGCTTCAGTCCCCCCAGTTTTGAAATTATTCGGCCAAAACGCTAAtgattcgggcaaaagctcttgggataaattatttatagagtccggcttctacaacacgatcaaacggtccaccttcaaaactttcaaaggctttgctgccaatctggcgatggctggcaattgttaacagtgtggacaagattataaatatttccggacggcgtcacggaaggaaagactctttccgttaataactttccgattttaacaagattgagcacacttaccaattaaggtttaaaaataactgtttcagtagaggtgcgaattgtaaaccttttttgttttccttgcaatttaagtgcgtttatctctaaatttcaacgcttacaccatttggcatagtgtaatcttttcgggcaagaagatcaccgcccgtacgccTACGGGTCAAAAACCTCAAAAACGTAACCGCCAGCGGATGATATGAGAATAGACACGCCAAGACTAGAGACCTCACGAGGGATTAAACTTGGGCAAGGTCGAAAAGTTTAAAGCCATCACGAGTAGTTCTCGATACAAAACAAGGCGAAACGCCAGAAAACTGGCTTAGTAAGGAAGATTTGAAGAAAAAGAAAAAGATTTAAAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5R4	MTRF1L release factor glutamine methyltransferase OS=Homo sapiens OX=9606 GN=HEMK1 PE=1 SV=1
Q921L7	MTRF1L release factor glutamine methyltransferase OS=Mus musculus OX=10090 GN=Hemk1 PE=2 SV=2
Q97F67	Release factor glutamine methyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=prmC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005398 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17827 all species →	PrmC_N	PrmC N-terminal domain	Domain	Interproscan
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004556 all species →	Family	Methyltransferase HemK-like	Interproscan
IPR050320 all species →	Family	Protein N5-glutamine methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR040758 all species →	Domain	Release factor glutamine methyltransferase, N-terminal domain	Interproscan
IPR019874 all species →	Family	Protein-(glutamine-N5) methyltransferase, release factor-specific	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18895 all species →	HEMK METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006479 all species →	Biological Process	protein methylation	Interproscan
GO:0008276 all species →	Molecular Function	protein methyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02493	hemK, prmC, HEMK; release factor glutamine methyltransferase	EC:2.1.1.297	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.