Gene detail

Detailed information of acyt_s0018.g105.t1 in Acropora cytherea

Genomic Location: sc0000018_pilon:2506844...2525548
NR annotation: XP_044167718.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114973981 [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0018.g105.t1

ATGGGAACTAAAGTTTTCGTAGTGGAGACttgtctgaatcgtactgaaatgataaaatccTctctgctgatatcccacaggaaaagatgggaagatgtcttcaatattcattcaaatgaacgcttaattcggggtttgcgtaatgattctacggctgctgatcctaatgtagaggaagtgaagataaTTGATCAGCTGGAGGAAAGGAAATACCACAAGGAGCCAAAATTGTCGCCAGATAGAGATCAACCAGTGACAGGTACGGAAGAGATAGTGGTTGGGCATAAAGCACTCTCTGAAGAAAATCTAGGTGACAAAAACGAACTAAGCAACGAGCTTCAACTAAATATCAATTTAAACTTCACTGAGCTAGCTGCGCGTTATTCACAAAGCCGACCGGAAGATGACATCAAATCCGAGGAAGTAATCTTAAGTCTTTGGGATTTTGCCGGCCAACATCTTTATTATGCTTCACATTCCGTGTTTTTGTCTGGGCGAGCAGTTTACATCTTGGTGTATAATCTCAATAAGAACTTACTGGCAACGGCAGAGCCTTGTGTCAGACAAGGCCTCAGTGACATCAGGCTGGATAATCcgaacaatgaaaccaacttggataatttgttgtcatggctagtctcaatccacaacatccgatctgctgccaacaaaaacgttgcacatcaactaacgaagctgccctatcaacggccgccagtgattatcgttggaacaaatttagatcagccctttgaagaagtagcgaccgcagaaatgcgtatcagggacagtattatgggcaaggagtatacaaaacatgtcataacgacattttttgctgtcgacaacagcacggaaaacgacgaaggtgtacggaagctacgtgacaaaatcatggaagtattgaaaggtgaaccttacatgcctgaggaggtaccactgaggtggtttaattttgaaagagctgttgatgctcttgtggccaagcagaCATACTTCATGGGTCTCGATCAACTTCGCTCTGTTATTCAACTGGATTGCCACATCGAAGACGAGGAagaagtgacaaccatgctgaatttctatcatgatctcggcgtgattgttaagcatggtcgaactgtagtgctgcaGgcccagtggctgattgaccttttcaggcaacttataaccgtgccgccttttaaagaggctattcctttgtacgtgaattgttggagagaacttgaagtaaacggtattctgagggaagctcttgtcgacgacgtgttttccaaattcatcgacgaaggcctttgcaaacaagatattctgggtatgatggagcagcatggattggttgccaaatttttaattgccactgatgaaaaccaacatgaacaaagatattttgttccgacgcagctaagatcatcgccatcagcactgtgccagatcaagccgtctaaatgtgatccgtgtccactggttctgcattttcttgatggttttgttccgcatgggctctttcctcagcttgtgtcaaagtttattcattggtgttctgaaaatggtttcaaaaagactccacagcttttcaagaatggggcgaggcttttcatcggaaaacagatcacatttgctcttatcctgatttgcagaaagcagttcatcaaaatcgttttaaagacaaggaatccgtcttcctgcaaatccctatcgatgaatgcctcaaacaaaatggctattgaagttcgcagctttatcgagagaaccttagatggcttaagcattcttcggtatgagttcagtgtggtgtgcacccattgccagcaacgcgagagtgaccttgacgggttgatgagttgttgccatgacgatcaattgcaccttcttcgagttggtcctggggaagagctgatttgcatggaaaatttctccgatgaaacggtcaaggttcctagatgggagatgtggttcgaagtatcccatacccagaccatggaaccagaagaggatactcagatagctgatgacttagctaaaagtgtgtcattcaagcctgggactgtgtcagaagatgatgttattcttattgcgcatgagcttggtcctttatgggaaaaggttggcctagtgctgaaagttccgaaagctgtgattagtcagattgaagcaaacaagtctgaagtctttaataaatgccataGTGAAGTGAAAGATTCCAAGTGCTCATGTGTTGCGGGTTCCTTGGGCTATTGCAATCATTCTTTAGCCTTAATGCTGAAGGCTTGTAAATTTAGTCTATATGGGTCCCAAAATACTAAAGACTTAGAACGTGAAGTTGATCAGATCCCAGAGCGAGCATGCACCTCAAAACTTCAAACTTGGCATCAAAAAGGTCGCGGTGAAACCATCTATCCTCAGCCAGTTATGGATGTCGTTGTTTCAAAAACCAAACAGGGAGATTCAAAACGTGGAAACGAAGGAATTCATTCTCTCCTTTACGAGGCAAGAAATAATGTAATGTACAACAGTGCAGAGGAGCAAAAATTCAAGCAGGCAATCAGAGATATAAACCCTCAAATGGGCCTTGCTCAAATTGTTACTCTTGGGAGTGAAAAGCATCTAAAAGAAACCAGATTTGGGCATAGTCCAGTGGGCTCTTATGTAAGCTACCAGCTAAGCCACACAGAGTCCAACTTTAATGTTTGCGTTGATATTTCCTCTGTGCCTCGAGGGAAGAAAAATAACCAGCCATTAATTTATCCCAGGTTTCCCTTACGAGATCGTGGACCGCCAACATTTCAAAACAATCAGCTAACAGCTGCAGAGAGGAACTTGTATGAATCACTATGCATTAATGAGGACATTGTTAATACTATTGAGAATGAGATCAGAGATCAGTCACATTGTGAAAGGTGGAAGCTTGAGCGAAAGTACCGTTTTACAGCATCTCAGTTTTATCTAATTTCCCACAGACAACGCAGTCATGATAAATTTGCTCAAGAAATCATGTGTCCAAAGACATTCCACTCTAGACACACAGCTCATGGGATTAAATATGAGCCAGTAGCGATCGACATGTATCACAAATACATGCACTGTCAAAAAACACCAGTACATGTTTTCAAAAGTGGATTTGTTGTATGCACTCAATCTCCAATTCTGGGGTGCTCTCCAGATGGAAAGGTAATAGACCCCAACTGTGAAGATCCCTTTGGTCTACTTGAAGTCAAGTGCCCAGAAACAAAGTTTCAAGTGAGTCCCCTTGATGCCTGCTCAGACCCCAAGTTCTTTTGTGAGAGGGCTGGGAACATGTGCAAGCTGAAAAAAACCCATGCTTACTATGCCCAAGTTCAGGGTCAAATGGGCTGTACTGGTGCACAATGGTGTGATTTTGTTGTTTACACCGAAAAAGGAATGTTAATTGAAAGAATCTCCTTTGACAGAGGTTACTGGGTTGAGCTTCAGGAGAAACTTTGGCAATATTATTTCACACATTTTATTAAGTATGCTGCAGCTGAATTTGCACCACCATGTACAGAAGCTGTTGTGGTTTGTCATCCTACAACAGCATCATAA

Transcript

acyt_s0018.g105.t1

ggaaCTCCACTTTAGGCGCCATGGGAACTAAAGTTTTCGTAGTGGAGACttgtctgaatcgtactgaaatgataaaatccTctctgctgatatcccacaggaaaagatgggaagatgtcttcaatattcattcaaatgaacgcttaattcggggtttgcgtaatgattctacggctgctgatcctaatgtagaggaagtgaagataaTTGATCAGCTGGAGGAAAGGAAATACCACAAGGAGCCAAAATTGTCGCCAGATAGAGATCAACCAGTGACAGGTACGGAAGAGATAGTGGTTGGGCATAAAGCACTCTCTGAAGAAAATCTAGGTGACAAAAACGAACTAAGCAACGAGCTTCAACTAAATATCAATTTAAACTTCACTGAGCTAGCTGCGCGTTATTCACAAAGCCGACCGGAAGATGACATCAAATCCGAGGAAGTAATCTTAAGTCTTTGGGATTTTGCCGGCCAACATCTTTATTATGCTTCACATTCCGTGTTTTTGTCTGGGCGAGCAGTTTACATCTTGGTGTATAATCTCAATAAGAACTTACTGGCAACGGCAGAGCCTTGTGTCAGACAAGGCCTCAGTGACATCAGGCTGGATAATCcgaacaatgaaaccaacttggataatttgttgtcatggctagtctcaatccacaacatccgatctgctgccaacaaaaacgttgcacatcaactaacgaagctgccctatcaacggccgccagtgattatcgttggaacaaatttagatcagccctttgaagaagtagcgaccgcagaaatgcgtatcagggacagtattatgggcaaggagtatacaaaacatgtcataacgacattttttgctgtcgacaacagcacggaaaacgacgaaggtgtacggaagctacgtgacaaaatcatggaagtattgaaaggtgaaccttacatgcctgaggaggtaccactgaggtggtttaattttgaaagagctgttgatgctcttgtggccaagcagaCATACTTCATGGGTCTCGATCAACTTCGCTCTGTTATTCAACTGGATTGCCACATCGAAGACGAGGAagaagtgacaaccatgctgaatttctatcatgatctcggcgtgattgttaagcatggtcgaactgtagtgctgcaGgcccagtggctgattgaccttttcaggcaacttataaccgtgccgccttttaaagaggctattcctttgtacgtgaattgttggagagaacttgaagtaaacggtattctgagggaagctcttgtcgacgacgtgttttccaaattcatcgacgaaggcctttgcaaacaagatattctgggtatgatggagcagcatggattggttgccaaatttttaattgccactgatgaaaaccaacatgaacaaagatattttgttccgacgcagctaagatcatcgccatcagcactgtgccagatcaagccgtctaaatgtgatccgtgtccactggttctgcattttcttgatggttttgttccgcatgggctctttcctcagcttgtgtcaaagtttattcattggtgttctgaaaatggtttcaaaaagactccacagcttttcaagaatggggcgaggcttttcatcggaaaacagatcacatttgctcttatcctgatttgcagaaagcagttcatcaaaatcgttttaaagacaaggaatccgtcttcctgcaaatccctatcgatgaatgcctcaaacaaaatggctattgaagttcgcagctttatcgagagaaccttagatggcttaagcattcttcggtatgagttcagtgtggtgtgcacccattgccagcaacgcgagagtgaccttgacgggttgatgagttgttgccatgacgatcaattgcaccttcttcgagttggtcctggggaagagctgatttgcatggaaaatttctccgatgaaacggtcaaggttcctagatgggagatgtggttcgaagtatcccatacccagaccatggaaccagaagaggatactcagatagctgatgacttagctaaaagtgtgtcattcaagcctgggactgtgtcagaagatgatgttattcttattgcgcatgagcttggtcctttatgggaaaaggttggcctagtgctgaaagttccgaaagctgtgattagtcagattgaagcaaacaagtctgaagtctttaataaatgccataGTGAAGTGAAAGATTCCAAGTGCTCATGTGTTGCGGGTTCCTTGGGCTATTGCAATCATTCTTTAGCCTTAATGCTGAAGGCTTGTAAATTTAGTCTATATGGGTCCCAAAATACTAAAGACTTAGAACGTGAAGTTGATCAGATCCCAGAGCGAGCATGCACCTCAAAACTTCAAACTTGGCATCAAAAAGGTCGCGGTGAAACCATCTATCCTCAGCCAGTTATGGATGTCGTTGTTTCAAAAACCAAACAGGGAGATTCAAAACGTGGAAACGAAGGAATTCATTCTCTCCTTTACGAGGCAAGAAATAATGTAATGTACAACAGTGCAGAGGAGCAAAAATTCAAGCAGGCAATCAGAGATATAAACCCTCAAATGGGCCTTGCTCAAATTGTTACTCTTGGGAGTGAAAAGCATCTAAAAGAAACCAGATTTGGGCATAGTCCAGTGGGCTCTTATGTAAGCTACCAGCTAAGCCACACAGAGTCCAACTTTAATGTTTGCGTTGATATTTCCTCTGTGCCTCGAGGGAAGAAAAATAACCAGCCATTAATTTATCCCAGGTTTCCCTTACGAGATCGTGGACCGCCAACATTTCAAAACAATCAGCTAACAGCTGCAGAGAGGAACTTGTATGAATCACTATGCATTAATGAGGACATTGTTAATACTATTGAGAATGAGATCAGAGATCAGTCACATTGTGAAAGGTGGAAGCTTGAGCGAAAGTACCGTTTTACAGCATCTCAGTTTTATCTAATTTCCCACAGACAACGCAGTCATGATAAATTTGCTCAAGAAATCATGTGTCCAAAGACATTCCACTCTAGACACACAGCTCATGGGATTAAATATGAGCCAGTAGCGATCGACATGTATCACAAATACATGCACTGTCAAAAAACACCAGTACATGTTTTCAAAAGTGGATTTGTTGTATGCACTCAATCTCCAATTCTGGGGTGCTCTCCAGATGGAAAGGTAATAGACCCCAACTGTGAAGATCCCTTTGGTCTACTTGAAGTCAAGTGCCCAGAAACAAAGTTTCAAGTGAGTCCCCTTGATGCCTGCTCAGACCCCAAGTTCTTTTGTGAGAGGGCTGGGAACATGTGCAAGCTGAAAAAAACCCATGCTTACTATGCCCAAGTTCAGGGTCAAATGGGCTGTACTGGTGCACAATGGTGTGATTTTGTTGTTTACACCGAAAAAGGAATGTTAATTGAAAGAATCTCCTTTGACAGAGGTTACTGGGTTGAGCTTCAGGAGAAACTTTGGCAATATTATTTCACACATTTTATTAAGTATGCTGCAGCTGAATTTGCACCACCATGTACAGAAGCTGTTGTGGTTTGTCATCCTACAACAGCATCATAATCAAACATTTAGTGCATATCTCACAGTGATTTGATAATTTTCCTAAGTTGAAGCTCAAAGACAGTGTAAAGTTTAAGTCTGTATCAGAATCACAAACCACTCATTAGTTTTCACTTCATAGGGCTGGTGAAAAGGCATACTGGAGTGGGTCATTACTTCTTTGATCCTTCAAAAAGTTGTGGGCTGTGTAATTTTTGACTTGACACAAGGTGTGGGTCATCTTCTTTTCCCATCTAAGGGGGAGGTCATCTATTTTCTGACCTGTATTTTGGGctctcgggatgtatccacaaatcatattgtccaagccttccctaaaacttattgtttgttggcataaatcccaagcgattctcaaaggaaggttttagtattttagtgcatgaatttttcgtgcttgcacaaagcattttctttggaatcttcactcaggggcacggctttcaaaatac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q1ZXD6	Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum OX=44689 GN=roco5 PE=3 SV=1
Q54WS5	Probable serine/threonine-protein kinase roco6 OS=Dictyostelium discoideum OX=44689 GN=roco6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000169 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for acyt_s0018.g105.t1 in Acropora cytherea.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0018.g105.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →