Gene detail

Detailed information of acyt_s0021.g123.t1 in Acropora cytherea

Genomic Location: sc0000021_pilon:1792144...1804946
NR annotation: XP_044173668.1, LOW QUALITY PROTEIN: protocadherin Fat 4-like [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0021.g123.t1

ATGATTTCCTTGAGTGTTCAGGTATTGAGCGTCTTGTTCTCTAGTTTCCTTGGTTTATCAAGCACAATCAGCCCAGAACCATTCATTATTTTTGGCAACACTGTGGACATTCGTAGAGTAAATCTTGATGGTACTGGTTACAATTATGTCGTTCAAGGCTTAACCAATGTTGTTGGTGTTGACTTTGATATAAAAACACAGACAATCTATTGGTCTGATATTGCTCTGAAGAAAATTCAAAGAGTTCATATTGACCTTGGATTACAACCTGGGAATATTGAAGATTTTGTAGTTGAAAACATAGGAATTCCTGAGGATTTGGCTGTTGACTGGATGGGAAGGAAACTTTTTTGGACAGATGCAAGTTTCAAAGTCATTGAGGTTATTCATCTCAATGGGACACAGCGGCAAGCACTAATAAGTACTGGTCACGACAAGCCAAGAGCTATAGCTCTTGATCCTTTGAATGACAAATTGTATTGGACTGACTGGGGAAGTGAACCCACAATATTTCGTGCAAAAATGAGTGATGGATCACAGAAACAGGTACTTGTGAATTCAGGCATTGTTTGGCCAAATGGAATTGCACTGGACTATGTTACCAGCACGTTATTCTGGGCTGATGCAAAAACAGACAAGGTAGAGAAATCTGACACTGATGGTCAGAATCGCAGAGTTCTAATTGATCGCACTGGTGTTTATCATCCTTATGCATTGACTCAATTTGGTGACCGCATCTATTGGACTGATTGGCAACGTCACAGTATTGAACACTGTAACAAGGATAGAGGAAACGACAGGGTTACAATTACAGGTGGTATGACCAGACCCACAGCTTTACATGTTTATCATCCTGACAGACAACCAGGAGCAGATACAAATGAATGCTTGACAGGAAATGGAGGATGCAGTCACACTTGTCATGATACAATAAGTGGATATCAATGTCATTGTCATTTGGGATTTGAACTTGGATCTGATTTTAAATCATGTCAAGATGTAAACGAGTGCAGCTATAATCGTGGGGGCTGTGCACAGCTCTGTATTAATTTTCCTGGAAGTTACAACTGTTCTTGCTTACCAGGTTACACCTTGCAGATTGATAACGTAACATGTGAAGATGAAGATGAGTGTCGGGTTGACAATGGGGGATGTGAGTTTAGCTGCAACAACACAGAGGCCTCCTATTACTGCATGTGTCGTTCTGGCTACATACTAGCAGCAGACAGACATTCTTGTGAGGATATTGACGAATGTCACACACTTGCCCACCGTTGCCCAGGTCAATGTGAAAACACCCCAGGTTCTTATGTCTGCTTGTGCTCATTGGGTCACACCTTCAATCCACTAACAAAGACTTGTGATGACATTAATGAGTGTGAAACCAACCAACATTCCTGTGAACAGAGTTGTGTGAACACAGAAGGAAGTTTCTATTGTAAATGCAACCCAGGATTCCTCCTAAACAGTGACCAGCTTACGTGTACAGACGTTGATGAGTGTAGTCAGGCAAATCATTCATGTCAGCATCATTGCGTGAACACTCTTGGTTCTTTCGTGTGTAGCTGTCATGCTGGGTATAGATTGACAGTTGATGGACGGACTTGTGAATTGGTTGATTGTGGAGAACCTGAGGGAATTGAAGGGATTGGAGTGAGGTGCACTGGTTCTAAGGATCAGTACAGGTTTAACAAGGTTTGCTCGCTTGTATGTACCACTGGAATTTTGATTGGTCCAAGAGTGATCACGTGCCAGGCATCTGGACAATGGACTGTCATCTCTGCACAGTGCATAGCTCAAGTCCCAGGCTCCAACAATCCGCCTCGGGGAATCTTATTGTCTTCGTCCTCTGTTCCAGAAAACTCACCTCACAGTACTTTGGTGGGTAGACTAACCACATTGGATCCTGATGAAGATCAGTTCTTTACGTACTCTTTGATTGATGGAGCTGATGTTTTTGCCATAGACAATGGCACTGGGATGTTAATAGTGGCGGGTGACTTGGATTACGAAACTCGATCAGTGTACACAGTGAAGCTTGTGTCTACTGATAGTGGTGTACCGCAGATGTCTGTTATTCAAAACCTAACTTTGTGGGTCACAGATGTTAATGAACCACCCAGTGCACCAACCTTATCCCCGTCAAAGATCTACGAAAACGCCTCTGTTGGATCTGTAATCGGTTTCCTCAACTCTTCAGATGTTGACTCTGATCAAGAAATATCTTACTCTCTGATTTCTAATGGTGGAGATAAATTCAGGATCGTTGGTCAACAGTTACAGCTGCAGTCGACACTGAACTATGAAGAAGTATCAAGTTTCAGTATTACAGGAGAAGCTAAAGACGATGGCTTCCCAAGACAAGCCACTGTATCGTTGCTGAATATTACCGTTATGGATTCAAATGACCCTCCAACCAGGATCATATTTCATGGGGGCATAATTAAGGAGTACACCAAACAGAGTTCTTCAGGAACACACAATGGGTCCGTTATTGGCAACTTCTCTACTGTGGATGAAGATATCGATCAACATCACGTCTATTCAATCTTAGGAGACAGCGACATCTTCACCATTAACCAGTCGCTATTAATATTAGCATGGGCTGAGAAGTTAGACTATGAAACACGCAGTCTTCGGACACTACTCATACGCTCAACCGATCCGCTGGGAGTCAGTGTTACGTCTTTGATCGAGATTCACCTTCTTGACGTCAATGAAAATCCCAGTGGTATTTTCCTGTCTGCGGATTCTCTCCTCGAGCATGCGTCTTTAAATACCACCATTGCTTCCTTGAGTGCGCGCGATCCAGACCTTTGCGATAATCACACTTTTAAGCTAGTGATTAATCCAAACGAGACATTCTCGATTTACGGCAAAACTCTAAGAGTTGCAAGGGACGTCGACTTCGAAACAATTAGAAATCCGCTTGTTATTCGACTGATAGCTGCTGACAAAGGTGGACTTTTCTTTGAGCAAAGTTTCAACATCACCGTTCTGGACAAGAATGAGCCACCAACAATGATCGTTGTCTCCGCAAGAAAAGCTTGTGTCTCATCAGCCGCGCTATGTGTTGAAGAAAACGAGCAGATTGGCTACCACGTTGCTGATGTCAAAATGGAAGATCCAGACAGAGGCGATTCTGGGCAGTGCGATGTGGTGAGCGATGATGTTTTGAGAATTGAAAGCGGTGCTTTGCTCGTCAATGGGAAAATAAACTACGAGGTATTGGACAGCTCGCGTGTGATTCAAGTTGAGATAAGATGCAGAGATAAGGGAGGGTTAACAATCCAGGCAACATTTGACGTCAGTGTTATAGACGTGAACGATCCCCCTACATCTGTTTCCCTGTCACAGTCGATTGTAAGTTCGAACGCCTCAGTGGGCAGTCTTGTTGGTACTTTCAACGTCGTTGATGAAGATAAACAAGATTTTCATTTGTGCTACCTCATGAATCCGGATAGTTTGTTTAGAGTCGATGGTATTCATCTTTTTGTTAAAAGACCGCTTACAAACGCCACATCCTTCCGCCATCCAATTTACGTTTTTTGTTCCGATGGTCGTCTTGTCAGTGTTCCTACTGTGCTCTATGTCGAAGTGCGAAGCAACCTGTTGTTGTCGCAAGTTAATGTCTCACTGAATTCAACACAAATAATGGAAAACGCGCCTGCGGGCAGTGTTGTTGGGCGTGTCACAGCGAGGACCTCCAATGCAAATGACTCTTTGTTACTTCAGCTCGATGATGATGCTAACGGAACTTTTGCTATGGTCAGCAGAAGGGCTGTAAATGCGAAAGACCTCGTTACTACCCGGTCATTAGACTACGAATTGGAAAACCAGTACCGAGTTGTTATTCGTGTTTATGGTAGTGGAGGAGCCACGGGTTTTCAAGTATTTACCATTCAAGTAATCGACGTCTATGAACCTCCAGAACACCTTATACTCCATCATGACCACGTGACTGAGGGCCTTACTGGTGCCTTGGTCGGTGTAATCACTCTCAAGGACCCACAGCTCAGCCACCTGTCGATTCAGCTCCTGTATGATCCTGACTCAGCTTTTGAGCTTCGTCCATCAGCCGTCCCTAACACATGGAAGCTCTTGACCCAACGCTCACTGGACTATGAGTCGGCACAGAGCTATCACATAGCGGTGCAAGTAAAGGATGCCAAAAATTCCATGACTGTCAATCAAACATTTACCATTTACGTCACGAACGTGAACGAGGCTCCTTCGTCAATCGTGCTTAGTAACGGCGTGATCCCTGAAAATAGTCCACTTGGGACTGTGGTCGGGAATATAGATGTAACGGACCCGGATGAACCGTACCTCCATCAAAACATTACTTGTGAATTACGAAATGACGCTGGTGGAACATTCTCGATCAGTGGTCTATCTCTTACCGTGTCAGATTCCCGAACGTTGAATTACGAGGCCCCAGGTGGTCCGGATTATTTGATTGATGTTGAATGCCAAGATCAGGACGGAGAGGCAACCCAACAGCAGTTTACTGTGAAGCTGACAGATGTCAACGAGCCGCCAATCCGAGTAGAGTCTTCCACTGGCAAATTTGAGATTGGCGAGAATTTAAACCCTGGAACAGTGGTTGCAGTGCTGGAAACAATTGACGAAGACAAGGGGCAAAGTTATTCTTACATCGCGGAACCGCATTCAGTCTTTACCATTGAAGGCGATCAACTGAAATCTCTTGTGAGATTTAATTATGAGGTTCAACATACTTATCACGTGAACATCAGCGTGACTGACAGTGGAAATGATACTTTGACTCAACTTGTTTTGATCAATGTATTGGATATGAATGATGCACCTTCAGGAATAGTGTTACCAAGTGGAATAGTAATTGCAGAAAATGCAAAGGCTGGCTTGCTTATTGGAGGGATGACGTCACTGGACGAGGACAGAGATCAGGAGCACAGTTACGTCATTCAAGCCCAGACCCCCAAAGAATCTCTTTTCGTTAGCGGTCGGAACAAGCTTTTTGTTAAAGACAATTCTGCAATTGACTTTGAGTTACACCGCCATGTAAATATCACCGTGACCACTACAGATAATGGAGCGCATTCGCAACTATCCACAACTGTGACACTATCGATACCTATTGCGGACGTCAACGAGCAACCTTATGATATTCTGCTCGGCTCTTCCGATGTCAGAGAGAATTCTCCCATTGGTGCATTTGTGGGCGTGGTCACAGTGCTTGACCCCGACATCGCGAACCCTGCTCAGTGGTTTCATTGTCAGCTTCTTGATGACGCTGGCGGAAGGTTTGGAGTTATGATAAACAGGTCTAAGATTGAGCTGTATTTAACTGGAAATGGACTCGCAATAAACTACGAGAAACACGCTTCTCATAACATTACCATGATATGCAGAGATAGCGGAGGACTCTCTTGCGTTAAAGAATTTTTAATCCAAGTTTTAGACGCAAACGATCCACCGTCTAACCTTATCTTCTCGGATTCACTTGGTGATACAATCTTGAATCCAAACCCTCCTGGTAATATATCAGATGTAAAGATTGTTTCCAAGGCAGTGGTAACTGTTAACGAGACTGCTGATGTAGGAATAACAATTGTAGCATACGTACATGTTATTGATGAGGATAACATCGACAATCCTCCACGGCCACAGACGCATGCGTGTCAGCTCGTGAGTCAAGCCGAAGCCCAGCTTCTTATCACTGTGGAAGCGCATGCCTCTCCTAACTCCAGGAGAAAACGTTCAATTGATGTGAGCAAGGTTCCTTCTGAATTTTTTATTCAACCAGGGACAAACTCTATCCTAGTCCGCCAGAAGCTCGATTACGAAAGGCAAGCGAATTACACTCTTTATTTGAAATGCACTGACGATGGTGTTCCGAAGATGTCCACATACGCCTCTGTCATTGTATTTGTTTTAGATGTACCCGAACCACCAACCGATGTATTGTTTTCTGCGCGGAGGATCCGTGAAAACGCTTCTTATGGAGCCGTGGTTTGTAATTTCAAAGTAGTAGATGCCGACTTGTCGCTCATGGGTTACTCTTTTGAAATAACAACACGCGGTGTCCCCTTTCGTCTAATTGGACAACGCATTGTCGTCTCACGTGTTCCGCTGGATCACGAGACTTCGCCGCTTATCACAGTGCAACTGACAACTCGCGAAGTGCTTACCACCTTAAAATTGGTGAAAACGTTTGATATTATAATCACTGATGTCAATGAAGCTCCAACCCGTGTAACGCTGGACGGAAAAACCACCGTGACGGTTTTCGAGAATGCGCCAATTGGCTACGTGATCGGACGGTTTAAAGTGGAAGATCAAGACGTCAATGACACCGTATTTTACATAACAATCCAAAGTGAAGAGAATGAGATAATCACGGATTTTAAAGTTTTAGAGCAAAATCTCGTTGTTGCAAGCCAGCTTAATTCTTGGTCACGTGATAGATATATTCTTAAGGTGCAAGCTACTGACCCCGGAGGTCTGAGTACAGTGAATGTTTTGACTGTTCTGGTAAGCGAGGTTGACGTGTGTTCAATGAACCGAAGTTATTGCAGTGCGTATGCCACTTGTACTCGTGCGGGGCCTGGACAAGCCTCGTGCTCTTGTAAACTTGGTTTTACCGGCGATGGTTTTCGCTGTGATGACGTAGACTACTGCAATCCGAACCCATGCCACCGCGATAACACGCTTGGTGAATGCTCGGATGGCTTCGGCGGTTGGAAAAATTATACGTGCAACTGTAAGCCGGGGTGGTCTCCTCCTGATTGTGATGTAGAAATCAACGAATGTCGTGCGAACCCTTGCAACTTCACTGGAACAGAAAACTGCGAGGATATCATAAACGATTTTAAGTGTCGTTGTAAGCCAGGCTTTAGCGGTAGACTTTGTGAAACAAACGTTAACGACTGTCAGCCATCGAGTTGTCTGAACGGAGGCGCATGCGTGAACAAAGTTAACGGCTATATCTGCTTGTGTAAAGATCCTTATATTGGAGTCAACTGTGACACTGATGATACTGTTTGTCGGGAAAATCCATCAATATGTCCCCGTAACGGGACTTGCATTTCTTTCGCAGGAGATCCAACGAAGTACACCTGTCGCTGCGAAGTACCTTGGGGTGGAAATTGCTCCGGCTGCGCACCAGGTTACGGGGGACAAAATTGTGCCCCATGTCAATATCCGTGGACTGGAGAGAATTGTGAGTTGGATTGGAGAAACTGTCACCCTAATCCTTGCTTAGAGGGGGGTAGCTGTTATCCACTGAAAGATAAAGACTTCTTGTGCTTATGTCCTCGAAGCCACAAAGGAAAGACCTGTGACACCCCCACAGAGGTAGGCACCAGCGTTAGTGGGTCGCACACGGGACTGAGTGCTGCAGGTCTCTATTCGCTTATTGGTAGCATTGTTTTGTTGTTGTTGATCATCATCTTTATACTGATTTTGTGGTGGAGACGGAGAAGGAGAAAATATCGATCGAGGAATGCACGTGTTGAATATCATTCAAGACGCAAGAAGACCGTAGTGAGTTTGCCTTTTATAGAAATGATGACCAAAAATGAGTACACTTTTGAAAATCCTTCTTTTGTCGCTGAACCAATTGTGAGCGGAACATTAAAGATTCAAAATAGCGGTGACTACGGCCCCGGAAGGTTCAAAACGGTGGCTGCGGTGACAGAAATAAAAATCTCAGACAGTAAAGTTGCTATTGCCTGCGATAACCCAGTGTATGAATCAGCGGATGAAGTGTTACAGAAACACGCAGGCGTTGTACATAATCCACTATTTGCATATgaagaagaagaggaagaagaacaagaacaagaagagaaagaagaacaggaaggagaagaTGCTGAGGAGGATACAAGTTCGCGACTTTGA

Transcript

acyt_s0021.g123.t1

AAAGGTTGTGTTTCAATCTTCGTTTGTATTGAAGAATGATTTCCTTGAGTGTTCAGGTATTGAGCGTCTTGTTCTCTAGTTTCCTTGGTTTATCAAGCACAATCAGCCCAGAACCATTCATTATTTTTGGCAACACTGTGGACATTCGTAGAGTAAATCTTGATGGTACTGGTTACAATTATGTCGTTCAAGGCTTAACCAATGTTGTTGGTGTTGACTTTGATATAAAAACACAGACAATCTATTGGTCTGATATTGCTCTGAAGAAAATTCAAAGAGTTCATATTGACCTTGGATTACAACCTGGGAATATTGAAGATTTTGTAGTTGAAAACATAGGAATTCCTGAGGATTTGGCTGTTGACTGGATGGGAAGGAAACTTTTTTGGACAGATGCAAGTTTCAAAGTCATTGAGGTTATTCATCTCAATGGGACACAGCGGCAAGCACTAATAAGTACTGGTCACGACAAGCCAAGAGCTATAGCTCTTGATCCTTTGAATGACAAATTGTATTGGACTGACTGGGGAAGTGAACCCACAATATTTCGTGCAAAAATGAGTGATGGATCACAGAAACAGGTACTTGTGAATTCAGGCATTGTTTGGCCAAATGGAATTGCACTGGACTATGTTACCAGCACGTTATTCTGGGCTGATGCAAAAACAGACAAGGTAGAGAAATCTGACACTGATGGTCAGAATCGCAGAGTTCTAATTGATCGCACTGGTGTTTATCATCCTTATGCATTGACTCAATTTGGTGACCGCATCTATTGGACTGATTGGCAACGTCACAGTATTGAACACTGTAACAAGGATAGAGGAAACGACAGGGTTACAATTACAGGTGGTATGACCAGACCCACAGCTTTACATGTTTATCATCCTGACAGACAACCAGGAGCAGATACAAATGAATGCTTGACAGGAAATGGAGGATGCAGTCACACTTGTCATGATACAATAAGTGGATATCAATGTCATTGTCATTTGGGATTTGAACTTGGATCTGATTTTAAATCATGTCAAGATGTAAACGAGTGCAGCTATAATCGTGGGGGCTGTGCACAGCTCTGTATTAATTTTCCTGGAAGTTACAACTGTTCTTGCTTACCAGGTTACACCTTGCAGATTGATAACGTAACATGTGAAGATGAAGATGAGTGTCGGGTTGACAATGGGGGATGTGAGTTTAGCTGCAACAACACAGAGGCCTCCTATTACTGCATGTGTCGTTCTGGCTACATACTAGCAGCAGACAGACATTCTTGTGAGGATATTGACGAATGTCACACACTTGCCCACCGTTGCCCAGGTCAATGTGAAAACACCCCAGGTTCTTATGTCTGCTTGTGCTCATTGGGTCACACCTTCAATCCACTAACAAAGACTTGTGATGACATTAATGAGTGTGAAACCAACCAACATTCCTGTGAACAGAGTTGTGTGAACACAGAAGGAAGTTTCTATTGTAAATGCAACCCAGGATTCCTCCTAAACAGTGACCAGCTTACGTGTACAGACGTTGATGAGTGTAGTCAGGCAAATCATTCATGTCAGCATCATTGCGTGAACACTCTTGGTTCTTTCGTGTGTAGCTGTCATGCTGGGTATAGATTGACAGTTGATGGACGGACTTGTGAATTGGTTGATTGTGGAGAACCTGAGGGAATTGAAGGGATTGGAGTGAGGTGCACTGGTTCTAAGGATCAGTACAGGTTTAACAAGGTTTGCTCGCTTGTATGTACCACTGGAATTTTGATTGGTCCAAGAGTGATCACGTGCCAGGCATCTGGACAATGGACTGTCATCTCTGCACAGTGCATAGCTCAAGTCCCAGGCTCCAACAATCCGCCTCGGGGAATCTTATTGTCTTCGTCCTCTGTTCCAGAAAACTCACCTCACAGTACTTTGGTGGGTAGACTAACCACATTGGATCCTGATGAAGATCAGTTCTTTACGTACTCTTTGATTGATGGAGCTGATGTTTTTGCCATAGACAATGGCACTGGGATGTTAATAGTGGCGGGTGACTTGGATTACGAAACTCGATCAGTGTACACAGTGAAGCTTGTGTCTACTGATAGTGGTGTACCGCAGATGTCTGTTATTCAAAACCTAACTTTGTGGGTCACAGATGTTAATGAACCACCCAGTGCACCAACCTTATCCCCGTCAAAGATCTACGAAAACGCCTCTGTTGGATCTGTAATCGGTTTCCTCAACTCTTCAGATGTTGACTCTGATCAAGAAATATCTTACTCTCTGATTTCTAATGGTGGAGATAAATTCAGGATCGTTGGTCAACAGTTACAGCTGCAGTCGACACTGAACTATGAAGAAGTATCAAGTTTCAGTATTACAGGAGAAGCTAAAGACGATGGCTTCCCAAGACAAGCCACTGTATCGTTGCTGAATATTACCGTTATGGATTCAAATGACCCTCCAACCAGGATCATATTTCATGGGGGCATAATTAAGGAGTACACCAAACAGAGTTCTTCAGGAACACACAATGGGTCCGTTATTGGCAACTTCTCTACTGTGGATGAAGATATCGATCAACATCACGTCTATTCAATCTTAGGAGACAGCGACATCTTCACCATTAACCAGTCGCTATTAATATTAGCATGGGCTGAGAAGTTAGACTATGAAACACGCAGTCTTCGGACACTACTCATACGCTCAACCGATCCGCTGGGAGTCAGTGTTACGTCTTTGATCGAGATTCACCTTCTTGACGTCAATGAAAATCCCAGTGGTATTTTCCTGTCTGCGGATTCTCTCCTCGAGCATGCGTCTTTAAATACCACCATTGCTTCCTTGAGTGCGCGCGATCCAGACCTTTGCGATAATCACACTTTTAAGCTAGTGATTAATCCAAACGAGACATTCTCGATTTACGGCAAAACTCTAAGAGTTGCAAGGGACGTCGACTTCGAAACAATTAGAAATCCGCTTGTTATTCGACTGATAGCTGCTGACAAAGGTGGACTTTTCTTTGAGCAAAGTTTCAACATCACCGTTCTGGACAAGAATGAGCCACCAACAATGATCGTTGTCTCCGCAAGAAAAGCTTGTGTCTCATCAGCCGCGCTATGTGTTGAAGAAAACGAGCAGATTGGCTACCACGTTGCTGATGTCAAAATGGAAGATCCAGACAGAGGCGATTCTGGGCAGTGCGATGTGGTGAGCGATGATGTTTTGAGAATTGAAAGCGGTGCTTTGCTCGTCAATGGGAAAATAAACTACGAGGTATTGGACAGCTCGCGTGTGATTCAAGTTGAGATAAGATGCAGAGATAAGGGAGGGTTAACAATCCAGGCAACATTTGACGTCAGTGTTATAGACGTGAACGATCCCCCTACATCTGTTTCCCTGTCACAGTCGATTGTAAGTTCGAACGCCTCAGTGGGCAGTCTTGTTGGTACTTTCAACGTCGTTGATGAAGATAAACAAGATTTTCATTTGTGCTACCTCATGAATCCGGATAGTTTGTTTAGAGTCGATGGTATTCATCTTTTTGTTAAAAGACCGCTTACAAACGCCACATCCTTCCGCCATCCAATTTACGTTTTTTGTTCCGATGGTCGTCTTGTCAGTGTTCCTACTGTGCTCTATGTCGAAGTGCGAAGCAACCTGTTGTTGTCGCAAGTTAATGTCTCACTGAATTCAACACAAATAATGGAAAACGCGCCTGCGGGCAGTGTTGTTGGGCGTGTCACAGCGAGGACCTCCAATGCAAATGACTCTTTGTTACTTCAGCTCGATGATGATGCTAACGGAACTTTTGCTATGGTCAGCAGAAGGGCTGTAAATGCGAAAGACCTCGTTACTACCCGGTCATTAGACTACGAATTGGAAAACCAGTACCGAGTTGTTATTCGTGTTTATGGTAGTGGAGGAGCCACGGGTTTTCAAGTATTTACCATTCAAGTAATCGACGTCTATGAACCTCCAGAACACCTTATACTCCATCATGACCACGTGACTGAGGGCCTTACTGGTGCCTTGGTCGGTGTAATCACTCTCAAGGACCCACAGCTCAGCCACCTGTCGATTCAGCTCCTGTATGATCCTGACTCAGCTTTTGAGCTTCGTCCATCAGCCGTCCCTAACACATGGAAGCTCTTGACCCAACGCTCACTGGACTATGAGTCGGCACAGAGCTATCACATAGCGGTGCAAGTAAAGGATGCCAAAAATTCCATGACTGTCAATCAAACATTTACCATTTACGTCACGAACGTGAACGAGGCTCCTTCGTCAATCGTGCTTAGTAACGGCGTGATCCCTGAAAATAGTCCACTTGGGACTGTGGTCGGGAATATAGATGTAACGGACCCGGATGAACCGTACCTCCATCAAAACATTACTTGTGAATTACGAAATGACGCTGGTGGAACATTCTCGATCAGTGGTCTATCTCTTACCGTGTCAGATTCCCGAACGTTGAATTACGAGGCCCCAGGTGGTCCGGATTATTTGATTGATGTTGAATGCCAAGATCAGGACGGAGAGGCAACCCAACAGCAGTTTACTGTGAAGCTGACAGATGTCAACGAGCCGCCAATCCGAGTAGAGTCTTCCACTGGCAAATTTGAGATTGGCGAGAATTTAAACCCTGGAACAGTGGTTGCAGTGCTGGAAACAATTGACGAAGACAAGGGGCAAAGTTATTCTTACATCGCGGAACCGCATTCAGTCTTTACCATTGAAGGCGATCAACTGAAATCTCTTGTGAGATTTAATTATGAGGTTCAACATACTTATCACGTGAACATCAGCGTGACTGACAGTGGAAATGATACTTTGACTCAACTTGTTTTGATCAATGTATTGGATATGAATGATGCACCTTCAGGAATAGTGTTACCAAGTGGAATAGTAATTGCAGAAAATGCAAAGGCTGGCTTGCTTATTGGAGGGATGACGTCACTGGACGAGGACAGAGATCAGGAGCACAGTTACGTCATTCAAGCCCAGACCCCCAAAGAATCTCTTTTCGTTAGCGGTCGGAACAAGCTTTTTGTTAAAGACAATTCTGCAATTGACTTTGAGTTACACCGCCATGTAAATATCACCGTGACCACTACAGATAATGGAGCGCATTCGCAACTATCCACAACTGTGACACTATCGATACCTATTGCGGACGTCAACGAGCAACCTTATGATATTCTGCTCGGCTCTTCCGATGTCAGAGAGAATTCTCCCATTGGTGCATTTGTGGGCGTGGTCACAGTGCTTGACCCCGACATCGCGAACCCTGCTCAGTGGTTTCATTGTCAGCTTCTTGATGACGCTGGCGGAAGGTTTGGAGTTATGATAAACAGGTCTAAGATTGAGCTGTATTTAACTGGAAATGGACTCGCAATAAACTACGAGAAACACGCTTCTCATAACATTACCATGATATGCAGAGATAGCGGAGGACTCTCTTGCGTTAAAGAATTTTTAATCCAAGTTTTAGACGCAAACGATCCACCGTCTAACCTTATCTTCTCGGATTCACTTGGTGATACAATCTTGAATCCAAACCCTCCTGGTAATATATCAGATGTAAAGATTGTTTCCAAGGCAGTGGTAACTGTTAACGAGACTGCTGATGTAGGAATAACAATTGTAGCATACGTACATGTTATTGATGAGGATAACATCGACAATCCTCCACGGCCACAGACGCATGCGTGTCAGCTCGTGAGTCAAGCCGAAGCCCAGCTTCTTATCACTGTGGAAGCGCATGCCTCTCCTAACTCCAGGAGAAAACGTTCAATTGATGTGAGCAAGGTTCCTTCTGAATTTTTTATTCAACCAGGGACAAACTCTATCCTAGTCCGCCAGAAGCTCGATTACGAAAGGCAAGCGAATTACACTCTTTATTTGAAATGCACTGACGATGGTGTTCCGAAGATGTCCACATACGCCTCTGTCATTGTATTTGTTTTAGATGTACCCGAACCACCAACCGATGTATTGTTTTCTGCGCGGAGGATCCGTGAAAACGCTTCTTATGGAGCCGTGGTTTGTAATTTCAAAGTAGTAGATGCCGACTTGTCGCTCATGGGTTACTCTTTTGAAATAACAACACGCGGTGTCCCCTTTCGTCTAATTGGACAACGCATTGTCGTCTCACGTGTTCCGCTGGATCACGAGACTTCGCCGCTTATCACAGTGCAACTGACAACTCGCGAAGTGCTTACCACCTTAAAATTGGTGAAAACGTTTGATATTATAATCACTGATGTCAATGAAGCTCCAACCCGTGTAACGCTGGACGGAAAAACCACCGTGACGGTTTTCGAGAATGCGCCAATTGGCTACGTGATCGGACGGTTTAAAGTGGAAGATCAAGACGTCAATGACACCGTATTTTACATAACAATCCAAAGTGAAGAGAATGAGATAATCACGGATTTTAAAGTTTTAGAGCAAAATCTCGTTGTTGCAAGCCAGCTTAATTCTTGGTCACGTGATAGATATATTCTTAAGGTGCAAGCTACTGACCCCGGAGGTCTGAGTACAGTGAATGTTTTGACTGTTCTGGTAAGCGAGGTTGACGTGTGTTCAATGAACCGAAGTTATTGCAGTGCGTATGCCACTTGTACTCGTGCGGGGCCTGGACAAGCCTCGTGCTCTTGTAAACTTGGTTTTACCGGCGATGGTTTTCGCTGTGATGACGTAGACTACTGCAATCCGAACCCATGCCACCGCGATAACACGCTTGGTGAATGCTCGGATGGCTTCGGCGGTTGGAAAAATTATACGTGCAACTGTAAGCCGGGGTGGTCTCCTCCTGATTGTGATGTAGAAATCAACGAATGTCGTGCGAACCCTTGCAACTTCACTGGAACAGAAAACTGCGAGGATATCATAAACGATTTTAAGTGTCGTTGTAAGCCAGGCTTTAGCGGTAGACTTTGTGAAACAAACGTTAACGACTGTCAGCCATCGAGTTGTCTGAACGGAGGCGCATGCGTGAACAAAGTTAACGGCTATATCTGCTTGTGTAAAGATCCTTATATTGGAGTCAACTGTGACACTGATGATACTGTTTGTCGGGAAAATCCATCAATATGTCCCCGTAACGGGACTTGCATTTCTTTCGCAGGAGATCCAACGAAGTACACCTGTCGCTGCGAAGTACCTTGGGGTGGAAATTGCTCCGGCTGCGCACCAGGTTACGGGGGACAAAATTGTGCCCCATGTCAATATCCGTGGACTGGAGAGAATTGTGAGTTGGATTGGAGAAACTGTCACCCTAATCCTTGCTTAGAGGGGGGTAGCTGTTATCCACTGAAAGATAAAGACTTCTTGTGCTTATGTCCTCGAAGCCACAAAGGAAAGACCTGTGACACCCCCACAGAGGTAGGCACCAGCGTTAGTGGGTCGCACACGGGACTGAGTGCTGCAGGTCTCTATTCGCTTATTGGTAGCATTGTTTTGTTGTTGTTGATCATCATCTTTATACTGATTTTGTGGTGGAGACGGAGAAGGAGAAAATATCGATCGAGGAATGCACGTGTTGAATATCATTCAAGACGCAAGAAGACCGTAGTGAGTTTGCCTTTTATAGAAATGATGACCAAAAATGAGTACACTTTTGAAAATCCTTCTTTTGTCGCTGAACCAATTGTGAGCGGAACATTAAAGATTCAAAATAGCGGTGACTACGGCCCCGGAAGGTTCAAAACGGTGGCTGCGGTGACAGAAATAAAAATCTCAGACAGTAAAGTTGCTATTGCCTGCGATAACCCAGTGTATGAATCAGCGGATGAAGTGTTACAGAAACACGCAGGCGTTGTACATAATCCACTATTTGCATATgaagaagaagaggaagaagaacaagaacaagaagagaaagaagaacaggaaggagaagaTGCTGAGGAGGATACAAGTTCGCGACTTTGACAGTGATCATCTCAAAATTTCTGAATCTTTCACCTGACTAATGATAGGTACTGTGAATGTCGAGATGCTGTTCGTTCCACTTGCTTCAAAATGGCAGTCGCAGCTGGGTAAACACAATCTGAACCCTAGTCAGTTTATTCCCCTGTCTTTTCTCTGCAAGGATAAAGGGGACATAAAACACGGAAACATTCTGCCATTACTAAGGCAATCCTTCTTCATTTAAGTCATTATTTGGCGAATTTGCCCGAGGAAGCGAAGTACACCAGAAAAGCCTGTTAACAGGTACAATTTTTGTCGAAGCAACTTAATGCAAATTTTATAGCTCATGAAAGCCCGTTACCGTTTAGCGCTATTTTACTTCGATTTATCGCTGCGATATCGCAAAAAGGGGGGCTCAAGGGTTTGCAGCGATGCAGTATTGCGTTATTTTTGGTACGGTTTTGGAGGAATTCTTATCTGAGCCTACGGTCTTGCGCTTTCACAAGACTAATACCAATTTCGTAAATTTCCATGCGGTTTTGCGGTTTTTGTAAAGTTTTTTTGTGCGGTTTTTGCGCCCCCCTCACGCCCTCTCCCCTCCGTAAACGATTAGAACTTGCTTGGAAGTTGCTGCAATaagtttaacttcgcttttctgtaattaattcttgattattctaagtcgtttgacaagaaaagtgtgaactattttaggatgaaattgtgtgataagtttggagagaagaaaaaagaaaaaatggtcctgaggtgttaaggtcgtccgcttaactggaaaacaggttatttcaagtcgctgacaggacgcgaaacggctgcgaaatgtactaactgaaaaaggaaaaaaaagcaagttcaaagct

Protein

acyt_s0021.g123.t1

MISLSVQVLSVLFSSFLGLSSTISPEPFIIFGNTVDIRRVNLDGTGYNYVVQGLTNVVGVDFDIKTQTIYWSDIALKKIQRVHIDLGLQPGNIEDFVVENIGIPEDLAVDWMGRKLFWTDASFKVIEVIHLNGTQRQALISTGHDKPRAIALDPLNDKLYWTDWGSEPTIFRAKMSDGSQKQVLVNSGIVWPNGIALDYVTSTLFWADAKTDKVEKSDTDGQNRRVLIDRTGVYHPYALTQFGDRIYWTDWQRHSIEHCNKDRGNDRVTITGGMTRPTALHVYHPDRQPGADTNECLTGNGGCSHTCHDTISGYQCHCHLGFELGSDFKSCQDVNECSYNRGGCAQLCINFPGSYNCSCLPGYTLQIDNVTCEDEDECRVDNGGCEFSCNNTEASYYCMCRSGYILAADRHSCEDIDECHTLAHRCPGQCENTPGSYVCLCSLGHTFNPLTKTCDDINECETNQHSCEQSCVNTEGSFYCKCNPGFLLNSDQLTCTDVDECSQANHSCQHHCVNTLGSFVCSCHAGYRLTVDGRTCELVDCGEPEGIEGIGVRCTGSKDQYRFNKVCSLVCTTGILIGPRVITCQASGQWTVISAQCIAQVPGSNNPPRGILLSSSSVPENSPHSTLVGRLTTLDPDEDQFFTYSLIDGADVFAIDNGTGMLIVAGDLDYETRSVYTVKLVSTDSGVPQMSVIQNLTLWVTDVNEPPSAPTLSPSKIYENASVGSVIGFLNSSDVDSDQEISYSLISNGGDKFRIVGQQLQLQSTLNYEEVSSFSITGEAKDDGFPRQATVSLLNITVMDSNDPPTRIIFHGGIIKEYTKQSSSGTHNGSVIGNFSTVDEDIDQHHVYSILGDSDIFTINQSLLILAWAEKLDYETRSLRTLLIRSTDPLGVSVTSLIEIHLLDVNENPSGIFLSADSLLEHASLNTTIASLSARDPDLCDNHTFKLVINPNETFSIYGKTLRVARDVDFETIRNPLVIRLIAADKGGLFFEQSFNITVLDKNEPPTMIVVSARKACVSSAALCVEENEQIGYHVADVKMEDPDRGDSGQCDVVSDDVLRIESGALLVNGKINYEVLDSSRVIQVEIRCRDKGGLTIQATFDVSVIDVNDPPTSVSLSQSIVSSNASVGSLVGTFNVVDEDKQDFHLCYLMNPDSLFRVDGIHLFVKRPLTNATSFRHPIYVFCSDGRLVSVPTVLYVEVRSNLLLSQVNVSLNSTQIMENAPAGSVVGRVTARTSNANDSLLLQLDDDANGTFAMVSRRAVNAKDLVTTRSLDYELENQYRVVIRVYGSGGATGFQVFTIQVIDVYEPPEHLILHHDHVTEGLTGALVGVITLKDPQLSHLSIQLLYDPDSAFELRPSAVPNTWKLLTQRSLDYESAQSYHIAVQVKDAKNSMTVNQTFTIYVTNVNEAPSSIVLSNGVIPENSPLGTVVGNIDVTDPDEPYLHQNITCELRNDAGGTFSISGLSLTVSDSRTLNYEAPGGPDYLIDVECQDQDGEATQQQFTVKLTDVNEPPIRVESSTGKFEIGENLNPGTVVAVLETIDEDKGQSYSYIAEPHSVFTIEGDQLKSLVRFNYEVQHTYHVNISVTDSGNDTLTQLVLINVLDMNDAPSGIVLPSGIVIAENAKAGLLIGGMTSLDEDRDQEHSYVIQAQTPKESLFVSGRNKLFVKDNSAIDFELHRHVNITVTTTDNGAHSQLSTTVTLSIPIADVNEQPYDILLGSSDVRENSPIGAFVGVVTVLDPDIANPAQWFHCQLLDDAGGRFGVMINRSKIELYLTGNGLAINYEKHASHNITMICRDSGGLSCVKEFLIQVLDANDPPSNLIFSDSLGDTILNPNPPGNISDVKIVSKAVVTVNETADVGITIVAYVHVIDEDNIDNPPRPQTHACQLVSQAEAQLLITVEAHASPNSRRKRSIDVSKVPSEFFIQPGTNSILVRQKLDYERQANYTLYLKCTDDGVPKMSTYASVIVFVLDVPEPPTDVLFSARRIRENASYGAVVCNFKVVDADLSLMGYSFEITTRGVPFRLIGQRIVVSRVPLDHETSPLITVQLTTREVLTTLKLVKTFDIIITDVNEAPTRVTLDGKTTVTVFENAPIGYVIGRFKVEDQDVNDTVFYITIQSEENEIITDFKVLEQNLVVASQLNSWSRDRYILKVQATDPGGLSTVNVLTVLVSEVDVCSMNRSYCSAYATCTRAGPGQASCSCKLGFTGDGFRCDDVDYCNPNPCHRDNTLGECSDGFGGWKNYTCNCKPGWSPPDCDVEINECRANPCNFTGTENCEDIINDFKCRCKPGFSGRLCETNVNDCQPSSCLNGGACVNKVNGYICLCKDPYIGVNCDTDDTVCRENPSICPRNGTCISFAGDPTKYTCRCEVPWGGNCSGCAPGYGGQNCAPCQYPWTGENCELDWRNCHPNPCLEGGSCYPLKDKDFLCLCPRSHKGKTCDTPTEVGTSVSGSHTGLSAAGLYSLIGSIVLLLLIIIFILILWWRRRRRKYRSRNARVEYHSRRKKTVVSLPFIEMMTKNEYTFENPSFVAEPIVSGTLKIQNSGDYGPGRFKTVAAVTEIKISDSKVAIACDNPVYESADEVLQKHAGVVHNPLFAYEEEEEEEQEQEEKEEQEGEDAEEDTSSRL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P98157	Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus OX=9031 GN=LRP1 PE=2 SV=1
G3V928	Prolow-density lipoprotein receptor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Lrp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009736 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016339 all species →	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0034332 all species →	Biological Process	adherens junction organization	Interproscan
GO:0044331 all species →	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0021.g123.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →