Gene detail

Detailed information of acyt_s0021.g193.t1 in Acropora cytherea

Genomic Location: sc0000021_pilon:2586595...2591396
NR annotation: XP_029192186.2, peroxisomal multifunctional enzyme type 2-like [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0021.g193.t1

GATCTTGTACATCGCGTCCATCTTCGAGGGGCTTTCAAGGTAACTCGAGCTGCCTGGCCACACATGCGAAAACAGAATTACGGAAAGATTATTATGACCTCATCCACCTCTGGTGTTTTGGGGAATTTTGGTCAAGCGAACTACAGTGCAGCAAAACTGGGTCTTGTGGGTCTAAGCAATACGTTATCAATTGAAGGACGAAAGTACAACATTCACTGCAATTCCATTGTTCCAACAGCAGCCTCCAGACTGACCCATGGGATTCTACCCTCAGATGTTATGGAAGCTCTCAGACCTGAATATGTTGCCCCATATGTGGTTTACCTCTGTCATGAATCATGCCCAGAGACTGGTGGAGTGTTTCCTATAGCTGGTGGATGGGCCTCACAGTTAAGGTGGCAAGAAACTGCTGGAGCAGTTCTGTTTGGAAAGGGTGGCAGTGTACCCTCTCCAGAATTGGTGCGAGACAACTGGGTTCAAGTGACTGACTGGTCAGGTCAAAAACAATCAGAGACCCAAGGAGCTTTAAACTTTCCAGAGCTCCTAGCAAGGCTTGAAGAAGCTAAAGCGTCATCAATGTCAGAATCATCTGCAGATTCAATGAGCAGCAATGACATAGTCAGACAGCTGAAAGCTTCAGAGTCACATTTCACATACACGTTTAAGAATGTGATCCTATATGCTCTTGCTGTAGGGGTTAAGTTTGAAGAAGATTTCTCTCACTTGAAATTTGTCTATGAAAGAGATGACAACTTTGGAGTTTTGCCGACATTTGGTGTTATTCCTGCGCAGGACTCAATAGGTCCCCTTATTTCACATGCAGCTGATGTCGCTGGTATCCCACTTGACCCTTCCAAGTTCCTTCATGGGGAACAGTTTTTAGAGCTTTACAAACCCATTCCAACATCAGGAACAGTAACCAACACCACAGAAGTGGTTGACATCCTAGACAAGGGGAAAGGAGCATTGATTCTTGTCAATGTGATCACTAGAGATGACAAAGGAGAAGCTATTTGCTCCAATCAGTTCTCCTTTTATATCGGTGGTGGAGGAGGATTTGGAGGAAAAAGGCATTCAGATCACACTAAACCTCTAGTTGCCACACCAAAGCGTCCCCCAGATGCTAGCATTAAAGAGAAGACAAGCTGTTGTCAAGCTTTGTGGTACAGACTCTGTGGCGATTATAATCCTATACATATTGACCCACAGTTTGCGCAGATGGGAGGTTTCTCAACTCCTATCCTTCATGGCCTATGTTCGTTTGGCTTCGCAGTGCGTCACATCTTAAAGCAATATGCTGATGATGATGTCACTAAATTCAAAGCCGTCAAAACACGGTTTTCCAAGCCAGTTATCCCTGGACAGACAATCCAGACTGACATGTGGAGGGATGGGAACAGAGTTCTTTTTCAGTGTAAAGTGGTTGAAAATGGCCAAGTAGTTCTATCAGGTGGTTATGTGGACTTGAAGAACGTTACAGATTCTAAGAAAGCACTTCCTAATGGTAATGCATTGCGGTCGCAGCCAATGAAGGCAGAGGAGCTTAAGAGTGAAACTCTTTTCAAAGAAATTGCTCAACGAATCTCTGATAACCCTGACCTTGTCAAGAAGGTCAAAGGCATCTTTGAGTGGAATGTGACCAAAGGAGGGAAGCCCACTGGACAGTGGATTGTGGACCTCAAACGTGGGCGTGGCTCAGTTACAGTGGGTCCGTGCAAGCAAGGCAAACCAGATTGTAGCATAACTGTGGATGATGATGACTTGGTTTCCATGGCAAAAGGGAAGGCAAATCCACAGCAGCTATTCATTAATGGGAAGCTAAAAGTGAAAGGAAACATAATGCTGACCACTAAGCTGGGTCAGATCTTCAAGGAACATGCCAAGATATAGTAGGTCAAAAACATATGATGGAGTTATCAGCACTCATTAATTGGTGATTTGTTTTTTTCTTTTTATTGTTAAGGAAATTGAGCCAAAGAAAGCCGATCAGTAAGCCAAGAACGGCTTCAAAATACGACAAAAATTGTTGTGTCCTTCAAACGAGATCAGAATCGATAATCTCTTACTATGGACATGCCACGGCCAGTTACAATAATGACTGTTGTTTTTAGATAATCATTTACGAACGAACGCGCGCGCCTTGAAACTAGTCAATCAAATCAAACTTAGCCGCGTCTGCGCGTTGGGGACAAAAAAGGTGACGACAATGATCATCATAGCAATACCACAAATTTAATCGTAAAATTGATAACAATGACGATTGCAACTATGGCTCTCCTGGTGATAACGATGGTGATTCTCGTACTTAGAGCAGTTTTCAAATGACTGTCGAAGtcatttgaaaaccgctctaaaATCACGTTTCGTATTTAGTCCAAGAGGACAGCTTAAATCGTATTATATCAATTTAAGATTAGAGCAGAAGATTTAAGTACGTTTAACAAACTCAACTTCTCAGAAGCAACCAGCTAATCTTGATTGGATTGGTACGTAGGAGGCTAAAGCCAAAATTCGAATTCAGAACATTGCAAGGAAAAATTTATGACTAATAACCAAAACATGCGTTTGAGATATGAAACGTTGCAAAAAAAAAAATTGACGATATTTGCACTATGGATAAGAAGGTCGTAACGCGATTCTACTTCTTAGTTGTGTGATTGGTTACTCGCGTACCCTCTGGCTTTTTGGCACCTCACCTATTCGGGATTGTTTCCGGTTCGTGCGTTTTGTTTCCGTGTCGCCTTTCTACGCGGGCATTTCCGCTTATTAATTCGCTCTCGTTTGCGCCGATCTTCGTTCTTTGACCTTCGCTCGTTTCATGGCTTTGAGAGGTAATTAGTGTTTCCTTTTTGTGTCAATGTACTTTGAATACGCTGTCGTCAGTGATTTGCTTTGCGCAGAGGTTGCGCAACATGTTTCCTCGCCTGTGATGACAATTTGGCTTGCCTCCGTGTTCACGTCCAACGTTATGGTATAAGTTAGTTCCCGTTGAGTTAAATGACTTGACTTTGTGGGTACCAGGGGTAATGATCTCGTTGCCTGGAAACGAACTGTACAAAACTGATCAATAAGTTATGGATCTTTTATGAAACCAGATATCCTATTTTGAATTTTTTTTAATTAAAGGGTTGAAAAAGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97852	Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus OX=10116 GN=Hsd17b4 PE=1 SV=3
P51660	Peroxisomal multifunctional enzyme type 2 OS=Mus musculus OX=10090 GN=Hsd17b4 PE=1 SV=3
P51659	Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens OX=9606 GN=HSD17B4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005067 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF01575 all species →	MaoC_dehydratas	MaoC like domain	Domain	Interproscan
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR002539 all species →	Domain	MaoC-like dehydratase domain	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR029069 all species →	Homologous_superfamily	HotDog domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13078 all species →	PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003857 all species →	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0004300 all species →	Molecular Function	enoyl-CoA hydratase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0044594 all species →	Molecular Function	17-beta-hydroxysteroid dehydrogenase (NAD+) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0021.g193.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →