Gene detail

Detailed information of acyt_s0021.g85.t1 in Acropora cytherea

Genomic Location: sc0000021_pilon:1410244...1421182
NR annotation: XP_029193786.2, vacuolar protein sorting-associated protein 33A-like [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0021.g85.t1

GATGTCAAATAAATGTAATGTAGTGTATCCTCAATATGGCCGCTGCTGGAGGGGCTCACTTGTCTCGTGATCGAGTTAATGTGGGATTACTACGAGAATGTGCGAGAAGAGAGCTTTTGCAGTGCTTAAACAAACAACCCGGATCGAAGGCTCTTGTCTGGGATGACAAACTTACTGGACCATTTGGATTAATTGCTGAATACAAACTGTTGAAGGAGCATGAAGTCGAAGTAATGTTTCCACTTGGTCCTGGGCGATTACCTCCCTCTCAAGTCCACAATGTTATTTTCATAACAAGACCCAAACCATCACTGATGGACATCATTGCAGATAACGTGCTCAGTGAAGAAGGCAGGCAAAGCAAGAAAAAAGAATTTACTGTTCTATTTGTCCCCAGAAAGACATTGTTATGTGAAAGAAGGCTAATGGAACGAAATGTTTCCTTCATCAACGTCAATGAATATCCCCTGGAGTTGATACCTCTAGACAGTGATGTCTTGTCACTTGAAATGGAGTCAAGCTTTAAAGAATGCTATTTGGAATATGACTTCACATCTCTTTTCTATGTTGCCAACTCCTTGATGACTCTGCAAACATTGTACGGTACGATTCCTAAGATTTATGCTAAGGGGACCATGTCCAAGCGTGTTCTTGACATGATGATGCGAAAGAAGAGAGAAGCAGCAGATTCTGAAAATCAAGTGTCACCCCAGATTGACACACTTCTTTTGATTGACCGTAATGTGGATCTTTTGACTCCAATGTTCACACAGCTCACATATGAAGGATTGATAGATGAATTATATGGAATACACCACACCACCGCCAAGTTCCCACAAGAGCGATTTCCTCAAGCAGAGGAAAAGGGTCCAGGTGGATTACAACAGCCTCAGCAACCACCAGGACCAAAGAAAGTCGTTCTGAATTCCAGCGATGAGCTGTTTGATGATTTACGAGATCTGAACTTTTCTGCTGTGGGGATTCATTTGAGCAGGAAAGCCAAACAGATCAGTGCTGCTTTTGAAGAACACAAAAGTGCAAAGACAGTTGGAGAGGTAAAGCAATATGTACAGAAAATTCCTTACATGCAAAGAGCCAAAGCATCTCTGGCAACACATACAACCATAGCCGAGATGATTAAAGAAGAGACGGACGCTGAAGAGTTTAGGGAACGAATTCAGGTTGAACAAGAGTTGGCTCAAGGCTTAGACACGGACAAAATCAACCCCTACATTGAGAAATGTTTTGGAATAAAGAAATCTTTATTCACGGTTCTCCGCTTGTTATGTGCTCAGTGCTTGACGAATGATGGCTTTAAACCCAAGACGCTTGAGTTCTACTTGCGCGAAATACTGCAGACGTATGGTTTTGAGCATGTGTATAAGACGCTTTCCCCGTTGCAGACAGTAGGCTTAATAAGACAGCAATCCCCACGATCTTACAATGTATTGCGCAAGTCACTTAAGCTTGTGGTGGAGGACGTCCAAGAACAGAATCCAAATGATATCGCGTATGTATTTTCTGGATATGCTCCACTTACTGTACGGCTTGCTCAGTTCTTGGCGCGGCCTCAAGGCTGGCGGGGACTCGAAGAGGTTCTTCGATTACTCCCCGGACCAGCAATTGAAGAAATCCAACGTCTTCCACCTGGACTTCAGAAAAGGGCGTCCCCTGGAGCGGGGCATTCCATGGACAGTCCATCGAAAGTCACTCTTATCTACTTTATTGGTGGATGTACTCATGCTGAAATATCTGCCCTTCGATTTCTCAGTCGACAGGAAAACAGTCAAATGGATTATTTGATAGCAACTACGAAAATCATCAATGGCACAGCGTTACTTCAGTCCATCATGGAGGAAGGCCCCTCGATCGAAGGCAACCCCTTTACGTAAAGTCTGAACGTCATCGTAGATCGTAATTTAAGCAAGAGCCTATTTTTCTTCTTAGCGTATATAGACGAAAGAGTTCCGCCTTCAATATCGCGCAAAGGAATAACTTCTCAGGGTCGAAACTATCACCGGAGTAAATACCCCCTACACGAAATGTGATTATGATCAAAGAATTGTATTTAGTGAACGCTGTTTGAGACAGAACTTGCAAGAGATCAGGCGTGCCTTTGCTTTGTACTTTGCCTTCTGCGCACAAGAACTTTATGACGAATGTGACATTCTACTTGCTGCAGACATATGTTTTTTCTTTTTTCCAATTAAAGTAGTAACTTAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AX1	Vacuolar protein sorting-associated protein 33A OS=Homo sapiens OX=9606 GN=VPS33A PE=1 SV=1
Q63615	Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus OX=10116 GN=Vps33a PE=1 SV=1
Q9D2N9	Vacuolar protein sorting-associated protein 33A OS=Mus musculus OX=10090 GN=Vps33a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995 all species →	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001619 all species →	Family	Sec1-like protein	Interproscan
IPR043127 all species →	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR043154 all species →	Homologous_superfamily	Sec1-like, domain 1	Interproscan
IPR027482 all species →	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR036045 all species →	Homologous_superfamily	Sec1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679 all species →	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0033263 all species →	Cellular Component	CORVET complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20182	VPS33A; vacuolar protein sorting-associated protein 33A	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.