Gene detail

Detailed information of acyt_s0024.g4.t1 in Acropora cytherea

Genomic Location: sc0000024_pilon:39716...50792
NR annotation: XP_015773236.1, PREDICTED: homeobox protein Dlx4a-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0024.g4.t1

TAACCAGTAAAGAACAGATAAACACTGTAAAACAAATGAGCGAAAACTGGCGAAGTGGCGTATCGTGGCGTTAGAAAACAAACAGTGCAAGAAATCGATGAAACGTTTACCAACCGACGCGATGGCTCAGCTTATTTGGAAACTAACCTATTCATTCGTCCCTTTCAGAATGGTTCAGTTGATAATGCTGAAAGCTGGCGCCAATGTGTCGATATTTGCAAAGAATGGTTGTTTTTCTTGGAACACAAGGATGGTGTCGCGGAAAAACCCAACGCCTTGAACTGTGCACGTGTATCATCGTTTCACTTTGTTGAAAAACGCATTTCCAACATACATATTAACCACTCCGCGCGTGGGCACAGTTTGTTTGACGCAACGGAGCTTGTCAGGTGAATGTTTGCCTGTCAAAGCGAGGTTCGAAGCGCAGCGCAGTTATAACAGACTTGATCGTTGAAGGATTCGGCCAAATGAACCTAAGCTACCAATCGGAGTACTGCTTTGAGCCCACGGCTCCATGCAAGTCTGCCTTCATGGAGCTGCCATCAACGCCTGGAGCTCACAGCTACCCAAACTACAATTCAGTTCCTTCAAATTACAATCCATACACCGCGGCGATGCGATACTATCGTCCTCCAACAAGCCAGGATTACCCTCTAGCTTGCAAAGCAAGAAATTCCTTTACCATGCCTCCTTTGAATCATCATCCGCTTTCACATCATCCATATTTATCGCCATCGTTGCAAGCGTTTGGAGCATCACACGATTCGCCTCATGACGATTTAAAAGGAGTTTGTGACGAACCAAGGCTCAACGGAAAAGGAAAGAAAATCCGAAAGCCGCGAACCATTTATTCAAGCTTTCAACTTCGAGAATTGACTAAACGTTTCCAAAGAACCCAGTACCTGGCTCTGCCAGAACGTGCTGAGTTAGCAGCTCTTCTTGGTTTGACGCAAACTCAGGTGAAAATATGGTTCCAAAATAGAAGATCGAAGTTTAAGAAGAATGTCAAAGCAAACGAAGACAACAGCAACTTCTCCGTTAGCGAAGACAGCATCAAGACAGAAGGAAGACCAGGATCATCGTCGAACGAAAGCGGCATTCCAAATGGCGTTGCATGGTCAAGCTCCGATTCCAACTCGACAGCAAGCCGCGACCCAGAAACTCCGCCAAGCTTTCCTATCCTGGCAAGTAACAAGCCCGTGAACTCAACACCACAGTGGTGCAGTGTTTCAAACCATGGAATCAAATCTCCATTTATCACAGAACGATGTCAAAGAATGTAACTGCAATGCAACAGAGCCTTCATTTAAAAGACTTCTTACTTAGCCTCTACGAAGCGAAATCAAGTGTACGGACAATGACAAATAGAGCTCGAGTGAGAATATATGGCGACTGAATGAATTTATCTCGTGCACCGACCACGCAAGCCTTCGATAGACTTCAACCAAAACAGAGTTATCCGCTCTTTCCTTCAACCACAAAATCGTTTAATTTGTATAGATTTTAAACTGTAAATATAATTTATTTGCGCTATTAAGTAAGCTACAACCGATGGTGGCATTTTCCTTAATTCTGGGAGAATTAAACTCCTTTTAACTTGGTTAAATTAATTGAAGTAGATTCCGGAGACATGATTTCAGTCTCAAGGGCCACCGTCTAGTATTTTTCTGCACTAGACTTCGATAGCACTGATGCGGTCTGGTAAAAGCATGAAAGAATATAAATATTGGAATTATTTACAATAAGATGACTACAGTGAACAACATTGCTGAAACTGGAGCTATTTCTTTCATTCGATATTCTTTGACATTGGCCTCGCACCCTTTTGTCAGTGTTCGGTGTACACGCCATTGTCAAATCACATTTATATCACGTTCTGCTCTCGGAAGAAAATTTGTGTGTTTCAAAGCGTATTGTAAGCAAACGAAGAGATTATAATAGCTTGTACGATCCACTGGTAGATAGAGAATCAATGATGTTTAGCGATAAATTAAGAACGTCAGTCATTAAAGAAACCATCATGTG

Protein

Uniprot

Gene family

Uniprot term	Description
Q98879	Homeobox protein Dlx4a OS=Danio rerio OX=7955 GN=dlx4a PE=2 SV=1
P20009	Homeotic protein distal-less OS=Drosophila melanogaster OX=7227 GN=Dll PE=2 SV=3
P53775	Homeobox protein DLL-4 OS=Xenopus laevis OX=8355 GN=dll4 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR050460	Family	Distal-less homeobox transcription factors	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24327	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18488	DLX2; homeobox protein DLX2	-	Transcription factors	ko03000	deepkoala