Gene detail

Detailed information of acyt_s0028.g76.t1 in Acropora cytherea

Genomic Location: sc0000028_pilon:1557866...1566013
NR annotation: XP_015775599.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0028.g76.t1

ATCTCCCAAACAGCCAACCAAATGGTTGCTACTCTTCGAAAACGAGAGCAAGAGCTAGGCCATTGTCGCCCTGAATCACACACTCGTGACCAAAATGGAGAAATTAAACGAAACGAAGAATCAAATCCTGTCCTTGCAAAAGCAAATAAATCAAGCAAGAGAGTTTGCCTTTACTTTGGTTGAAAGAAGTTCAAGCTCAGATATTGTACGAAACAAAGGAACTTTGGAGAACCGTTGTGAAGATCTGAAGAAGACTGCAATTCCAGCCGTTTCGGTAGGTTCATTTCTGACGTTTGTGCCAGTTGAACCAGAGAGCTTATCCATCGGTGTTATCGCCACCAACGATTTAACTATTGAAGGCCTGGCTCAAGATTTTCAAGCTGGCGTTGAAGCACAGTTTGTCATTGATTCTAAACTAGAGAAAGATGTGAGAAACCTTGAACTTATCGTGAAACCCACGAAACAAGTAGGAAGTTTGATCACAAGTGAAAACAAAGATGGAACTTTCCTGGCGAAAATTGTGCCCAAATTTCCTGGTACGTACAAGTTAAACGTTTCAAGACAGGGCGAAAAGCTTCACGAGAGACCATTCACATTCCAGGTTCAGGAGCGACGGCTTGAAGTTGTGGGAGAATTGGATTTACACGGGGAAACTCTTGAGGGTCCTGCTGGGGTTGCCGTGAATAGCGAGGGTCTCATTGTTGTCGCTGATTATAAAGGGGACCGCGTCCTGATGTTTGACACGCATGGGAAGTGTCTTTGTAAGTTTGGATGTAAAGGAGACTATGTTGGTCAGCTCAATTCTCCATGTGGAGTGACTTTTCTTGATGACCACAATATTCTTGTAGCCGATGAACTAAATCACCGTGTACAACAATTTGATGTACAGACAGGAGATGTTGTGAAGGTGTTTGGCGAGAAGGGATCAAAAAATGGTCAACTCCGAAATCCAACAGGCGTTTGCATAGATGATGAAGGACGTGTGATCGTTGCTGATTTTTTCAACAGCCGAATTCAGGTCTTTTCGAAGGATGGCAAACCAGTACTTCGATTTGGAAATAATAGCCCCGGCAATTTGAATCATCCCTTCGAATGCATTTTTCATGGAAACAATTTTATTGTTTCGGATGCACACAGCCACTGCTTAAAAATCTTTGATCGCTCAGGACGATTTCTGCACAAGATTGGAAAACAAGGGAACCAGGATGGACGTCTGAGGAAACCTTCGGGTTTGTGCATGGAGAAATGTAACATTCTTGTTTGCAATAGAGGCAATAACACAATTGATCAGTTTTCAGTTGAAGGCTCGTTTACCGGAAAAACCGTTGTTGAGTTCCCAGATCCTTGTGGAATCGCCACAACACCAAATGATGGGCGGATTTTAGTAACCAGTCATGAAGAGAACAAAGTTTTCATTTTGAAATAAACATGCATGAACAAAAATGGATTTAAGTTTTCGATTAAGAATTTCGTTTCACTTATCAATCAAACCATGACCATGCAACGACAAAAGAGGGGGCAGAATACAATATTAAATGTTAAAAAGAAAAGTCGCGATCTTACCTTAGAGCGACATCTTCAAAGTCAACATGCCTTCGAACAAGAGTTTCAAAATCAAGAGGATTCTTGGGAAAAAGATGAAGCAGAATAGGCCCATACCCCAGTGGGTGAGACTGAGAACTGGAAATACTATCAGGTATAATGCAAAGAGACGTCACTGGCGTAGAACCAAGTTGGGATTGTAGATGGAGTGACTGGATTTTACAACAACCTTGTTATTTTCAAGTCTTGTTTTCCATTTGGCATCTATCAGTTCAATCAACTGTTATTTCTGTATAAAACCAATTTATTAAAGTTGGCCAACACATTTTTCTTTCTTTGGTGCTTACTGTTAAAATGTTTGAAAACATACATGAAACAGGGAAGCCTCTTTGCTTCCTTCTTCTATGCTTGTTGATTTTTTTATGAACAGTCATGTCATAAGATTATCAAGGTGGCTTTTCACCATCACGATAAGTCCGGGGTGTGCTTTTGTTGATCGTTTATGGATATCTTTGTCCTCCTGAACTGTATCCCCATGATTCATGATATTCCTGATCATGTTTGAGGTTGAGCAACCTGTGGTTTAACTTGCAGTATCTTTATTactagcaataaacagagattaggaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan