Gene detail

Detailed information of acyt_s0029.g2.t1 in Acropora cytherea

Genomic Location: sc0000029_pilon:20856...41784
NR annotation: XP_029213549.1, probable U3 small nucleolar RNA-associated protein 13 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0029.g2.t1

CATTATCGTTTAGATGGAATTATTAAAGTGTGGGATTATTCAGCGTGTGAGCCAGGGAAGTTACTTCGCACCTCTCGAGAACATGATGGATGGGTCACAAGCTTTCTCTTTTGGGCAGATGCTAAGCTTCTCTTTTCAGCTGCCAATGATGGCATTATCATTGCATGGGGATCTGGTGGAGCTGTACATGACAAGATTCCAATTGGCTCCCCCGTGTATTGTATGTCTTGGAACGCGAGACGGCATCAGATAGTTGCAGCAATTGGTTGTACAGTTCAAGTGTTCAACATGAGAGATCCAAGCAGAGATATTATTGGGCATGTAATTGACCAAAAAGCCTTCATTTCTAAAGAGCACACAGACATTGTGAAGTGTGTCGTTTGTTTTGAATCAAGAGTTTATAGTGGAGGCTATGATCAAAAGTTTATTGTGTATGATTCAACTTTTTCCTATAAGGGGAACAAGAGCTTGTCACTGGTGGCAAAGATTAACAAAGCTCATGAAGCCGGTATCATTTGCATGTGTCTTGCACGAGATTCAGATAACAATACATGGGTACTCACAGGAGCTTTTGACAAAGTTGTAAAAGTGTGGTCTCAAGATGGACAAGTTATGCACAAGTTTGATGGATTTAGCGCTGCTGTGACAGGTGTGTGTTATGTTCGACCGACCAGAACAATATGGGTAGCAGCTGGAACTCAAGAAGCAAATATGTATGACCCCAAATCTGGGGAAAATGTAACAGATTTCATTGGGACATTTCAAAGTGAAGGAAATAGAGGCTATCCATTTGTGATGTTTCACTACATTTCTGACTTGGCTCAAGTCATAGGTACCAACAACAGGCGGCATTTAATATTTTGGAAATACAACTCATCCGGTTGTCTAACAACATTAAAGAACAGGTGTGCTATGGAGTCGCTTACATACACAAGAAAGGTTCCTTTGTTAATATTCAGTGGTGGAAGTAACGGAAATATTTCGAAATGGGAAAGATTACAGTCGAATAACTTCATGTACAGCAAAGAATTGCTTTTGCAAAGCGAGGGAAAGGCCCGCTTAGCCGCTCAAATAGCCTCACGTTACGACTGGCGGAGTCCTAAGAGGGGTAGTGAAGGGAGATCCAAACCATCTTTCCTCAACGCTATTAGTCAGATTCCTTCGGCTTCGGAACACACAAGCAACATTTCCTTGTTGAGGTCCATATTCGTGGAGGACCTCGATTTGCTTATTGTTGCATCAGAAGACAATAATATTTATGTGTGGGGTTTTGACGAGAATGCTGTGAAAGTTCTGGAAAACATGAAGCCTGTCGATGAAAGCCTGATTTATAAATATGCGATTCTGCTCGGAGGCAAGACCCTTAAACCAGTCACAAACGATAATGAGGCTTCCAAAGAACATGATTCAGTGACGAATCGAGTGGCGGGATTTATCTGTAGGCATGTGTTCACAGGACACAGTAGTTGTGTCACAGGACTGGCAGCCGTGGGTCGACAGGCTGGCTTCAATTCAACGTACCTGATTAGTGCTGGCTGGGATAGAAGAATCTTCCTGTGGGATTTAGAGGCAGCTAACTTTCACGATACATTCCGTAACAGCGGTCCAAGTACATTTGAAAACAGCGAACTTGCTTCAGATGGGATAATCATGGACTTGACTTACAGTCTAGACAGGAATGAGTTTGCTTATGCTTCGTCGGACAAACTAGTGTATATCAGACGGTTTTCAGATCGAGGAGCAGACATGACATTGTCAGCCGTTTTACAAGGACACGAGGCCGAGGTAACCCAGGTTCAATGGAATTCAGTGCTGGACAAATGGATCACGGGTTCAGAGGATGGCACAATTCGAGTATGGAGGGCAGATGGGATGGCCTGTGACTTGGTTCTTAGCGCTCAAGGAGCTGTGTCTGCTTTGTGTATCGATCAGTTAAACGGCTGCATTGTGGCAGGAGTACAGGAGATAATAAGAGTTTATGATCCCGAAACGAAAAAAATTGTCCAGAAGAATCTTGGCCACACTGATTCCGTGCGCAGCATAGTTCACATTCCCGAACGAAGCCAGTATGTCTCGGCATCATGGGATAAAACGGTTCGAATATGGAACGCTTACAAGAAGACTCGTAAGAAAGCTGCCAAGGACACAACAGAGCTCTCAGACATGTGAAGCGATTCCAACATCTGTGTGAATTCGTAATCATTTGTGTGAAATATTCTTGCGTTCATTACTGTACATAGATGTAAAGTAAATAtttgcttgtttttttttttgtttggtgttgtcgttattgCAACTACAAGCAGCTTTCTGTCGGTAGACAACACCATGCACACACTGTGGGCCCGTGATAGACGCATGCGTACAACCTATCACCGGTGCATATCCTTGTGCAGCCAAATATAGCTGTTTTGTCCTTGTTAGAGCTCGCCAGCAGGGCACAGCCAAGTTATTATAGGGAAGCACTTAGAGACTTAAAGCCAATGACTTGGAAGCCTCGGTTCTCGGTGAACGCGGAGAAATGGGAAGAGTGATGTGAAGGACCCTCTAGGGTTAACACTCTGGGAAGGCTTGTGAATCAGTTACTGGTACCTTTTGGAAAAAAAGGTACTGCTAATT

Protein

Uniprot

Gene family

Uniprot term	Description
Q9NSI6	Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=BRWD1 PE=1 SV=4
Q921C3	Bromodomain and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Brwd1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR053299	Family	ASTRA complex-associated WD repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44156	SUPERNUMERARY LIMBS, ISOFORM B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0051726	Biological Process	regulation of cell cycle	Interproscan
GO:0061136	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:1990756	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17302	COPB2, SEC27; coatomer subunit beta'	-	Exosome	ko04147	deepkoala