Gene detail

Detailed information of acyt_s0032.g63.t2 in Acropora cytherea

Genomic Location: sc0000032_pilon:1057796...1079366
NR annotation: XP_044177834.1, intersectin-1-like [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0032.g63.t2

ATGTCACAACTTGCTTCGTCTTCGCCTGGTGGGTTAGGTCCAACTCTTTCAGGTTCGTGGGTTATATCATCTGAGGATCGCACCAAACATGAAGCGACTTTTCAAAGCTTGAACCCTGCAAGTGGGTTTCTTACAGGAGAGCAAGCAAAGAAATATTTCCTTAAGTCCAATCTTCCACCAATGGTTCTTGGTCAGATATGGAACCTGTCAGATCTTGACCGCGATGGTAAAATGACCATGCAAGAATTCACCATAGCTGTACACCTAATTCAAAGTAAACTTAAAGGAATTGAATTGCCAACAACACTTCCCAACAGTCTAAGAATGACTTCCATGCCCAGTACATATCTCCTGGGGCAGAAGACAAAACCTAACCCAGATTGGGGCCAGCCTCCCATGCCAAATCCCGCAGTGTCCAATGGCTTTTCAAATGTGGGCATGATGACACTGCCTCATAAGCCTACCACTTCGGGAATTTCATGGTCTGGAGTTAACCAATCTCCACCTCAGACACGAGCAGTGGCATCATCTTCGTCAGTGTTTGGTTCATCATTTGGGTCTTCTTCAACTGTTAGCATGCCTTCGACATCTTTGTCTTCGACATTCAATGTTGGAGTGGCCAGTGGCTTGAGCTCTGGGTCTCCAAACTCTTCAATCCGTAATGGTCCAGGAAATCAAACTGCTTTTGGTCCAGGTTTGGTCCGTGTTCAAAGGGCCAATTCACTGACTGCTAATTTTGGCTCTAGTGCTGGGCCATATGGAACAATAACTCCAACCAATAGACTTAAGTATAATCAAATGTTTAAAGCAAACGACTTTTTAAAGACAGGATTTTTATCAGGTGATCAAGCTAGAAGCATCTTAATTCAATCAGGTCTTTCGCAAGGAATTTTAGCTCAAATATGGAATCTTTCAGACTTAGACAAAGATGGTCAACTCAATATAGAAGAGTTTGCGATAGCAATGCATTTTGTTGAAGTCGCAAAGGTTGGACAAGCACTCCCGCCAGCTGTTCCACAGGAGCTTCTGCCATTGGCTTATCAGTCCCGACAAGTTAGTGCAAATAATATGCCGTTGGTTCAAGAGGGACGAGAAAGGTCTGACAGTGGACTAGATAGGAGTGGCAGTGAAAGGGAGAGAAGTGGAAGCATAGATGGGAAATCAAGATCAGGAAGCATCACAGTTTTCACCTTTGAAGACAAAAGAAAAGATAATTTTGAAAAGGGACGTTTGGAACTTGAACGGAGACGCATGGAATTGCaggagaagatgaaaaaagaacgagatgagagagaaagaaaagaagcattgcaagaagaaagaagGCAGAGGGCCAAACTAGAAGCTGAACAGAAAAGACAAGCAGAGATAGAGAAGCAACGCCAACAACAGCTTGAGATGGAAAAGGAGCAGGAGGCATTGAGGAAGAAGATGATTCAACAGAGATTGGCAGCTCAGATTGAAGCTGAGAGACAAAGACAATTGGAGTGGGAAAAGAGGAAGAAGGAGGAATTATTAAATCACAAAAATATGGAACAAGATATTGTCAACAATTTGAAATCTAGACTTCAGAAACTTGAAGAAGAATTAACCAAAGTTAACAAAGCTAGAAATGAAGTCCAGGAGACATTAGACAAAGAAAGACAGACTTGTATGCAGTGCCAAGCATCAATGACCCTTGCTAATCAAAGCAAAGAAATGAGAATTGCTGAAATAAGTAGAGTGCAATGTGATGTCAAGGAATCGCAACAAAGAATAGTTGTCATAAAGAAGGAGAGTGAGAGGCTTGCTCAAGAAATCAACCAAAGTGATACTAATAAATTAGGCGATACTCATGGAAATGTCTTGGCCAGTGTGCAGGACTCGCGAGGAAATTTGAGGAGACTGCATACATTAAAGAACAACATGGAAAGAGTGCTGTCTGAGAAGTTGAAAGAATTGGACACAATCAATTCTCAAGTTAAAGACCTAAATACAAGTATGGCACAACTGTCTGGTCAAAGTGCCAGGTTACACCAAATAGCAGAAGCAAAGCAAAGAGAATACACCATCTGGAAACAGAGAAAAGATGAAGAGGAGAGACAACGCAGGGAAACGGAAGCCAGGAGAAAGCGAGAAGAGGATGAAGCAAGGAAACAGAGAGAAAGAGAACTGGATGCCATGCGACAGGAACAAGAGAAACAGCGGAAAGAGCAGGAGATGAGGAGACGTCTCAATGAAGCCAAACTGGCTGAAGAAGCGAGACGACAGGAGGAATTGAAAAAGCAACAGCTTATAACCAAAGACCAAATTCTTGTTCAACAGCAACAGATGCTGTTGTCAAGCAACCTCCCACCACCAAGAAATGTAGCCTCAAGCAGCGCGTCATCAAGCAGTAGGTCTGCAAGCAGCGTGTCGTCAAGTAGCGTGTCGTCAAGCAGCATGTCGTCCAGCAGCATGGGTCAGTCAAGTGCCAAACCTGTGGTGCGACACATCAGTAATGAGAAGATTATTGCCCCAGTCCAGACATCAGCGGGAGATGTGAAGCAAAAAGTGTTAGCAATGCAACAGTTAATAAAAGAGAAAGGCTCAGATGTCCAACCACCTTCTGCAAACGTTTTCAAACCGGTTGCTCCACCAAAAAAAGAATACTACAAAGCTCTTTATGAATTTGAACCCAGAAATCCAGACGAGATGGCATTGGATGAAGGAGACATCGTGGTGATTAATCCAGATGGCAAGAAGGCTCCTCCAGGCTGGCTGTTTGGTGAAGCTAATGGCAGAAATGGCCTCTTCCCAGAAAACTATGTAGAAAAGCTCTTCTTCTGTCAAATGTCTTGCTGCGTCTTTGAGCATGCAGTTTTCCTCTGGTGGGCTGCCTGGGGGGTCCTCTGCTTCCAACCAGGACTCTGCGGTTACGAGTACACAAGTTCCTGA

Transcript

acyt_s0032.g63.t2

TGAACGCAGCCTTGCGAATGAGGTGTTAGCTCGGCTGCTTCAGAGCGGTGAATGAAGTTGTTTTAGTATATTAGCACTGTCCCTCACTTGAGATACTCTTTAGCAAGTGATCAGTGTGTTAAATTTCACTTTACATCGTGAACGTTTCCGTTAAGTCTGTTTCATCGTCAACAGCCCTCTTCTTCAATATTGCTCTCTCAGTTCGCGCGTTTTGCGGCGTATTTTCGAAGACACACCATAGTTTACAGAACTTATTCGCTTATGGGCCGAGAAAGCTGCAATTTGAACAGTGTGGGCCGTCCTTGAACTCACCATTACCATAAACTTTGAGTGGAAGTGGTCCGCAACAGCTGGAAAATGATACTCTGGTAGAGAGGGTTCGACAATTTTTGAAGTGTTTCGAGATGTCACAACTTGCTTCGTCTTCGCCTGGTGGGTTAGGTCCAACTCTTTCAGGTTCGTGGGTTATATCATCTGAGGATCGCACCAAACATGAAGCGACTTTTCAAAGCTTGAACCCTGCAAGTGGGTTTCTTACAGGAGAGCAAGCAAAGAAATATTTCCTTAAGTCCAATCTTCCACCAATGGTTCTTGGTCAGATATGGAACCTGTCAGATCTTGACCGCGATGGTAAAATGACCATGCAAGAATTCACCATAGCTGTACACCTAATTCAAAGTAAACTTAAAGGAATTGAATTGCCAACAACACTTCCCAACAGTCTAAGAATGACTTCCATGCCCAGTACATATCTCCTGGGGCAGAAGACAAAACCTAACCCAGATTGGGGCCAGCCTCCCATGCCAAATCCCGCAGTGTCCAATGGCTTTTCAAATGTGGGCATGATGACACTGCCTCATAAGCCTACCACTTCGGGAATTTCATGGTCTGGAGTTAACCAATCTCCACCTCAGACACGAGCAGTGGCATCATCTTCGTCAGTGTTTGGTTCATCATTTGGGTCTTCTTCAACTGTTAGCATGCCTTCGACATCTTTGTCTTCGACATTCAATGTTGGAGTGGCCAGTGGCTTGAGCTCTGGGTCTCCAAACTCTTCAATCCGTAATGGTCCAGGAAATCAAACTGCTTTTGGTCCAGGTTTGGTCCGTGTTCAAAGGGCCAATTCACTGACTGCTAATTTTGGCTCTAGTGCTGGGCCATATGGAACAATAACTCCAACCAATAGACTTAAGTATAATCAAATGTTTAAAGCAAACGACTTTTTAAAGACAGGATTTTTATCAGGTGATCAAGCTAGAAGCATCTTAATTCAATCAGGTCTTTCGCAAGGAATTTTAGCTCAAATATGGAATCTTTCAGACTTAGACAAAGATGGTCAACTCAATATAGAAGAGTTTGCGATAGCAATGCATTTTGTTGAAGTCGCAAAGGTTGGACAAGCACTCCCGCCAGCTGTTCCACAGGAGCTTCTGCCATTGGCTTATCAGTCCCGACAAGTTAGTGCAAATAATATGCCGTTGGTTCAAGAGGGACGAGAAAGGTCTGACAGTGGACTAGATAGGAGTGGCAGTGAAAGGGAGAGAAGTGGAAGCATAGATGGGAAATCAAGATCAGGAAGCATCACAGTTTTCACCTTTGAAGACAAAAGAAAAGATAATTTTGAAAAGGGACGTTTGGAACTTGAACGGAGACGCATGGAATTGCaggagaagatgaaaaaagaacgagatgagagagaaagaaaagaagcattgcaagaagaaagaagGCAGAGGGCCAAACTAGAAGCTGAACAGAAAAGACAAGCAGAGATAGAGAAGCAACGCCAACAACAGCTTGAGATGGAAAAGGAGCAGGAGGCATTGAGGAAGAAGATGATTCAACAGAGATTGGCAGCTCAGATTGAAGCTGAGAGACAAAGACAATTGGAGTGGGAAAAGAGGAAGAAGGAGGAATTATTAAATCACAAAAATATGGAACAAGATATTGTCAACAATTTGAAATCTAGACTTCAGAAACTTGAAGAAGAATTAACCAAAGTTAACAAAGCTAGAAATGAAGTCCAGGAGACATTAGACAAAGAAAGACAGACTTGTATGCAGTGCCAAGCATCAATGACCCTTGCTAATCAAAGCAAAGAAATGAGAATTGCTGAAATAAGTAGAGTGCAATGTGATGTCAAGGAATCGCAACAAAGAATAGTTGTCATAAAGAAGGAGAGTGAGAGGCTTGCTCAAGAAATCAACCAAAGTGATACTAATAAATTAGGCGATACTCATGGAAATGTCTTGGCCAGTGTGCAGGACTCGCGAGGAAATTTGAGGAGACTGCATACATTAAAGAACAACATGGAAAGAGTGCTGTCTGAGAAGTTGAAAGAATTGGACACAATCAATTCTCAAGTTAAAGACCTAAATACAAGTATGGCACAACTGTCTGGTCAAAGTGCCAGGTTACACCAAATAGCAGAAGCAAAGCAAAGAGAATACACCATCTGGAAACAGAGAAAAGATGAAGAGGAGAGACAACGCAGGGAAACGGAAGCCAGGAGAAAGCGAGAAGAGGATGAAGCAAGGAAACAGAGAGAAAGAGAACTGGATGCCATGCGACAGGAACAAGAGAAACAGCGGAAAGAGCAGGAGATGAGGAGACGTCTCAATGAAGCCAAACTGGCTGAAGAAGCGAGACGACAGGAGGAATTGAAAAAGCAACAGCTTATAACCAAAGACCAAATTCTTGTTCAACAGCAACAGATGCTGTTGTCAAGCAACCTCCCACCACCAAGAAATGTAGCCTCAAGCAGCGCGTCATCAAGCAGTAGGTCTGCAAGCAGCGTGTCGTCAAGTAGCGTGTCGTCAAGCAGCATGTCGTCCAGCAGCATGGGTCAGTCAAGTGCCAAACCTGTGGTGCGACACATCAGTAATGAGAAGATTATTGCCCCAGTCCAGACATCAGCGGGAGATGTGAAGCAAAAAGTGTTAGCAATGCAACAGTTAATAAAAGAGAAAGGCTCAGATGTCCAACCACCTTCTGCAAACGTTTTCAAACCGGTTGCTCCACCAAAAAAAGAATACTACAAAGCTCTTTATGAATTTGAACCCAGAAATCCAGACGAGATGGCATTGGATGAAGGAGACATCGTGGTGATTAATCCAGATGGCAAGAAGGCTCCTCCAGGCTGGCTGTTTGGTGAAGCTAATGGCAGAAATGGCCTCTTCCCAGAAAACTATGTAGAAAAGCTCTTCTTCTGTCAAATGTCTTGCTGCGTCTTTGAGCATGCAGTTTTCCTCTGGTGGGCTGCCTGGGGGGTCCTCTGCTTCCAACCAGGACTCTGCGGTTACGAGTACACAAGTTCCTGAGTCAAAACCTTCGAAGCCAACAGCCAGTAAACAAGTGACGGATGGTTTCAGAGTGATTGCTCTATACCCTTACAGAGCAAAGAAGGACGACCACCTTACATTCAACAAAAATGATGTTATCATTGTAAAGGAACAGGAGGACCTGTGGTGGTCTGGTGAGCTCAATGGCAACGAGGGGTGGTTTCCAAAGTCATATGTCAAACTTCTTGGGGCCAATGTGCCGGTTACTGAtACCAGCGAAAAACCAGCCAATGGAGTAACAACAACGACAAATGCTAAATTGGAATTACCTCTTTCTGCGCCGGAGACAAAACCCAGCCCGACGACCACTCTATTTGAGTGTATCGCACTGTATAGTTACGCGGGAGTGGCTGGCGACCTCAGTTTCACTGAAGGAGATATCATCAAGGTTCACAAAGATGAAGGCGATTGGTGGGAAGGCAGCTGTAATGGACAAGAGGGACTGTTTCCCGCCAACTATGTGAAGAAGAAAGACACCGAGGCACCAAAGGCTGCTCCCCGGACTAAACCAGAAATCGCCACTGTGACGTCAGCATACAACGCTGTGACGGCGGAACAGTTATCATTATCCCCCGGTCAACTGATTCTGGTGAAACGGAAATACCCTGATGGATGGTGGGAAGGCGAGTTACAGGCTCGGGGAAAGAAGCGACAAAGTGGTTTATTTCCTGCAAATCACGTCAAAATCCTGGACAGAAAAGCTTCTGGTGGCTCTACAACTGGTCAGATTCCTAGTCCTGTCAGTGAAGCTATATACAGCGTGCCTTCTTCGGTACCCAGAGCCAAACAAGAACAGGTCTTGGCCATGTTCCCGTATACTGCGCAGAACCCGGACGAGCTTACTTTCTACAAGGGAAGCGTAATTAACGTATTGAGCAAACAGGGGGAGTGGTGGACGGGCGAGATGAACGGGCAAACGGGCATGTTCCCGTCAAACTACGTGCAGCCTTTGAGTGATGTGAAAGTCGGGACAACGCAATGACAAGAGGAAGAAGTGACAGAAATGCTTTGGGTGTGATCCTTCTTTTGAATGTCTAAGCCTAATCAGTGTACGAAATCATGCACTCATGCTTCTTGAATGATTAAGGAGTTAGGGCACATTCAAATACCGCAGTTCTTGACTTCATATTCATTCTTAGACATCATGTGTTAAGGCCTTAAGACTTGGGTTGCATTTTTGTTTCCTTAAGGTTCTTGATATACACATTTTGTAGTCAGAATTTCTGGAGAAAGTTTGGCGACCTTGTTCTTGGAAGTCTTGAAAAACGAGTGCGAAAAATCAGTCGGGGAATTTCGATTCGCTTATTCATAAAAAGTTGTTCTTTTAAAATAAACGAAAAATATATATATCATACCAATACAGGCAAGGTTTTGCCCTTTGAAATAAGGATTGGTCTAGGTCACGCCAAAATACGCCCTAAAATGTCGTACGAGCAAAACGGAATTCTGGGTCTCTTGTTTTTCCGTTCACGGGAGGGCGTAACTTCGTCCCCAGAGCTCTAAGCCTGCAGCCAGACGAAAGCTCTGGGATCGAATTTAGGTGTTAACGACTAAGAAAAAGAGCAGAAGAATAGAGAACTTAGTAACTAATTGGACAATCTGGCGAACCTTCTCTCCTTCCTTGCTTAGTGTTACGTTTTTCGTTCCGTGCTTTATTTGATTTCGTGTTTAATGGAACCCCATAAGCAATGGTTACTTTCTTGATCACGTTGCCGTTGAAAGAGAGGCACAGATAGACTTTCGAGTAGGGCTAAAGGATGGCTCCTCACCGCTTAATATCCCATGTAAGATTTGATTTCGTTTGGTCAGTTCTGTTATTGCAAAGAAGTTATTAGGCATGAGAACTAGAGCATATGTGATCACGCTTATGTGAGGAAGGAGACATTTTCGATGGTTGAAATTTAAACCCCTGGGCGATACCACGGTTATCCCTGAGCTGATATTATGTTAGAAGTTAAACCCTGAGTTTAAAGTTAAAGAATCTATTCAACGTTTCTAAAGATTGTTTGGCCTAAATGTAATATCAGCGTAATATAGAAAAGCTACGAATTAAATAACTGAATAAACTGTTAAGTTTGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0R6	Intersectin-2 OS=Mus musculus OX=10090 GN=Itsn2 PE=1 SV=2
Q9WVE9	Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2
Q9Z0R4	Intersectin-1 OS=Mus musculus OX=10090 GN=Itsn1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002086 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0097708 all species →	Cellular Component	intracellular vesicle	Interproscan
GO:0150007 all species →	Biological Process	clathrin-dependent synaptic vesicle endocytosis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0032.g63.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.