Gene detail

Detailed information of acyt_s0040.g107.t2 in Acropora cytherea

Genomic Location: sc0000040_pilon:1626567...1658466
NR annotation: XP_029211362.2, rho guanine nucleotide exchange factor 39-like [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0040.g107.t2

ATGTCGACCATTAATAATGGCGTCGGAAGTCCTTTTCGTCCAAAGCTGCACAGTGCCAAAAAGTTCCTATCTCTTCAAATTTCACAAACAAGTCAGGCAATTTCAACAGAATTCAACAATATGCTTCGCAACCAAACCAACGCCAGGAAGAGGAAGAAAGTAATTAATGAGATTTTTGCTACTGAAAAGACTTATCAAGACCATCTTCATGCTGTGACATCTCTGTTTCTTGCACCACTGCAAGTCGCATGCATTCTTCCGCAAACTGCACTGAACACAATCTTCTCAAACATTGAGGCCATCCAAGCAGTCAACAGAGAGCTCTTGAGTCATATGGAAACCTTGGGTGTGGGAGATGCCTTCTTAGCAATGGCACCTTTCATCAAACTTTACGGGAGCTATGCTAACAACTTTGCAAAGGCCCAAGCTGAATTACAGGAGTGGGAGAAGAAGAGTACAGAGTTTTCAACTTTCAAGAAAGCACAAGAAATACGTGAAGAATGCAAGGGATTAAATTTAGGTTCTCTGTTGATAACACCAGTGCAAAGAGTTCCAAGGTACAAGTTGCTGCTTGAAAGTCTTTTGAACAAAACACCAAGGGAACATCCAGATTTTGAAAAATTGCAAGAGGCAACTGTGGAAATTAACAAAGTGGCACATCATATTAACGAGAACATTCGGCAGCGTGAGAATTTTCAGAAAATGCTATCAATTCAGAAATCTCTGACAGGAGTTGGTGCTCCAAAAGTTTTAGCTCCAGGTCGGTTTTTCATTAGAGAAGGGCCTTTGTTAAAGGTGTGCGGTCGTGGATCACAGGAGAGGATGTTCTTTTTATTTTCGGATATTCTGATTTACGCAAAGAAAAATGGTTCAACCGATAAAGAACAAAGTTCATACTTGTGCCGCCGAGTGTTACCGCTGATCGATTGTGAAGTGGAGCAAGTGCTAGGCGGCTCAACAGAGGCCCAGGAAACCTCAGATGCTGGAGCACTGTTCAAGATAACTTGTTATGACAAATCCTTGCTATTGTATTCCAAGTCTAACATGGAAGCGCTGAACTGGTTTACTTGTATCACGGATGCTATCAGCAATGTAAGAACTTGCAGGGCGTCTCTGAGAAAACCTAAAAGGGAACATTATGAACTGCCAAAGAGGTCTGGAACCCCGCTGACAAGATCTGCAGCAAGGAAATCTCGGCGGGGATTTAGCTTTTTAAGACAGCTGTTTCTTGCACCACTGCAAGTTGCATGCATTCTTCCGCAAACTGCACTGAACACAATCTTCTCAAACATTGAGGCCATCCAAGCAGTCAACAGAGAGCTCTTGAGTCATATGGAAACCTTGGGTGTGGGAGATGCCTTCTTAGCAATGGCACCTTTCATCAAACTTTACGGGAGCTATGCTAACAACTTTGCAAAGGCCCAAGCTGAATTACAGGAGTGGGAGAAGAAGAGTACAGAGTTTTCAACTTTCAAGAAAGCACAAGAAATGCGTGAAGAATGCAAGGGATTAAATTTAGGTTCTCTGTTGATAACACCAGTGCAAAGAGTTCCAAGGTACAAGTTGCTGCTTGAAAGTCTTTTGAACAAAACACCAAGGGAACATCCAGATTTTGAAAAATTGCAAGCGGCAACAGTGGAAATTAACAAAGTAGCACATCACATTAACGAGAACATTCGTCAGCGTGAGAATTTTCAGAAAATGCTATCAATTCAGAAATCTCTGACAGGAGTTGGTGCTCCAAAAGTTTTAGCTCCAGGTCGGTTTTTCATTAGAGAAGGGCCTTTATTAAAGGTTTGCGGTCGTGGATCACAGGAGAGAATGTTCTTTTTATTTTCGGATATTCTGATCTACGCAAAGAAAAATGGTTCAACCGATAAAGAACAAAGTTCATACTTGTGCCGCCGAGTGTTACCGCTGATCGATTGTGAAGTGGAGCAAGTGCTAGGCGGCTCAACAGAGGCCCAAGAAACCTCAGATGCTGGAGCACTGTTCAAGATAACTTGTTATGACAAATCATTACTATTGTATTCCAAATCTAACATGGAAGCGCTGAACTGGTTTACTTGTATCACGGATGCTATCAGCAATGTAAGAACTTGCAGGGCGTCTCTGAGAAAACCTAAAAGGGAACAGTATGAACTGCCAAAGAGATCTGGAACCCCGCTGACAAGATCTGCAGCTAGGAAATCTCGGCGGGGATTTAGCTTTTTAAGACAGGATTCAGCAATGGATTGCTCAAATCCTCCAGCCTGCATCATGACAGATACCTTATATCCTATGCGTAAAGAGCTACTCGATAAACAATACCCCACTACACCCGGGATAGAAGGCTCAAATTCCAAGACCAGAAGACCTTTTGTAAGGGCAACTGTGCAAGCTACGACAAACACACGCTCGCGCTCCAAAGAAACTGTGATTAACTCTCCTTGGATTAAGAATGAAACTAACACAGTATTCTCGGTTGGTTCGGCAACGGGTGCAGGAAGCTTAACCATCAACGAAGGAGCTTCAGGAAGTCAGGAAACTGAAAATAAAGGAGCTGAACAGAGGGTGATGGACACGTGGTCTCAAAAACGGAAATTGTCTTTCAAGGAGAACATTGAAATGGATACTTTTTCCCCAGAAGAGGCCAAGAAACGTTGTTTTAAACAAAAAGTTGAAGTGCCATGTGTACAGGCAGTTGAATCTCCCTTGAGCAACGTCTGTGATCAAGCCAAGTTCACTCCAGCCAAACTCAAAACGACTCAGTACGTTAAGGATGAAGACCTTGTACAACCATCTTGTGTAGTCATGTAA

Transcript

acyt_s0040.g107.t2

CTTAAGAGGAAAATGAAAAAAAACACCCATGATTTCAGACTGCTAAGCCTTGGTACTCGGCAAAACCAACTAAGGACTGAAATTTTTCCTCTGTCACGAGAGAAGGCAAATGAGCCAATTAGGAAGGTTAAATTTGCTTAGATCATGTCGACCATTAATAATGGCGTCGGAAGTCCTTTTCGTCCAAAGCTGCACAGTGCCAAAAAGTTCCTATCTCTTCAAATTTCACAAACAAGTCAGGCAATTTCAACAGAATTCAACAATATGCTTCGCAACCAAACCAACGCCAGGAAGAGGAAGAAAGTAATTAATGAGATTTTTGCTACTGAAAAGACTTATCAAGACCATCTTCATGCTGTGACATCTCTGTTTCTTGCACCACTGCAAGTCGCATGCATTCTTCCGCAAACTGCACTGAACACAATCTTCTCAAACATTGAGGCCATCCAAGCAGTCAACAGAGAGCTCTTGAGTCATATGGAAACCTTGGGTGTGGGAGATGCCTTCTTAGCAATGGCACCTTTCATCAAACTTTACGGGAGCTATGCTAACAACTTTGCAAAGGCCCAAGCTGAATTACAGGAGTGGGAGAAGAAGAGTACAGAGTTTTCAACTTTCAAGAAAGCACAAGAAATACGTGAAGAATGCAAGGGATTAAATTTAGGTTCTCTGTTGATAACACCAGTGCAAAGAGTTCCAAGGTACAAGTTGCTGCTTGAAAGTCTTTTGAACAAAACACCAAGGGAACATCCAGATTTTGAAAAATTGCAAGAGGCAACTGTGGAAATTAACAAAGTGGCACATCATATTAACGAGAACATTCGGCAGCGTGAGAATTTTCAGAAAATGCTATCAATTCAGAAATCTCTGACAGGAGTTGGTGCTCCAAAAGTTTTAGCTCCAGGTCGGTTTTTCATTAGAGAAGGGCCTTTGTTAAAGGTGTGCGGTCGTGGATCACAGGAGAGGATGTTCTTTTTATTTTCGGATATTCTGATTTACGCAAAGAAAAATGGTTCAACCGATAAAGAACAAAGTTCATACTTGTGCCGCCGAGTGTTACCGCTGATCGATTGTGAAGTGGAGCAAGTGCTAGGCGGCTCAACAGAGGCCCAGGAAACCTCAGATGCTGGAGCACTGTTCAAGATAACTTGTTATGACAAATCCTTGCTATTGTATTCCAAGTCTAACATGGAAGCGCTGAACTGGTTTACTTGTATCACGGATGCTATCAGCAATGTAAGAACTTGCAGGGCGTCTCTGAGAAAACCTAAAAGGGAACATTATGAACTGCCAAAGAGGTCTGGAACCCCGCTGACAAGATCTGCAGCAAGGAAATCTCGGCGGGGATTTAGCTTTTTAAGACAGCTGTTTCTTGCACCACTGCAAGTTGCATGCATTCTTCCGCAAACTGCACTGAACACAATCTTCTCAAACATTGAGGCCATCCAAGCAGTCAACAGAGAGCTCTTGAGTCATATGGAAACCTTGGGTGTGGGAGATGCCTTCTTAGCAATGGCACCTTTCATCAAACTTTACGGGAGCTATGCTAACAACTTTGCAAAGGCCCAAGCTGAATTACAGGAGTGGGAGAAGAAGAGTACAGAGTTTTCAACTTTCAAGAAAGCACAAGAAATGCGTGAAGAATGCAAGGGATTAAATTTAGGTTCTCTGTTGATAACACCAGTGCAAAGAGTTCCAAGGTACAAGTTGCTGCTTGAAAGTCTTTTGAACAAAACACCAAGGGAACATCCAGATTTTGAAAAATTGCAAGCGGCAACAGTGGAAATTAACAAAGTAGCACATCACATTAACGAGAACATTCGTCAGCGTGAGAATTTTCAGAAAATGCTATCAATTCAGAAATCTCTGACAGGAGTTGGTGCTCCAAAAGTTTTAGCTCCAGGTCGGTTTTTCATTAGAGAAGGGCCTTTATTAAAGGTTTGCGGTCGTGGATCACAGGAGAGAATGTTCTTTTTATTTTCGGATATTCTGATCTACGCAAAGAAAAATGGTTCAACCGATAAAGAACAAAGTTCATACTTGTGCCGCCGAGTGTTACCGCTGATCGATTGTGAAGTGGAGCAAGTGCTAGGCGGCTCAACAGAGGCCCAAGAAACCTCAGATGCTGGAGCACTGTTCAAGATAACTTGTTATGACAAATCATTACTATTGTATTCCAAATCTAACATGGAAGCGCTGAACTGGTTTACTTGTATCACGGATGCTATCAGCAATGTAAGAACTTGCAGGGCGTCTCTGAGAAAACCTAAAAGGGAACAGTATGAACTGCCAAAGAGATCTGGAACCCCGCTGACAAGATCTGCAGCTAGGAAATCTCGGCGGGGATTTAGCTTTTTAAGACAGGATTCAGCAATGGATTGCTCAAATCCTCCAGCCTGCATCATGACAGATACCTTATATCCTATGCGTAAAGAGCTACTCGATAAACAATACCCCACTACACCCGGGATAGAAGGCTCAAATTCCAAGACCAGAAGACCTTTTGTAAGGGCAACTGTGCAAGCTACGACAAACACACGCTCGCGCTCCAAAGAAACTGTGATTAACTCTCCTTGGATTAAGAATGAAACTAACACAGTATTCTCGGTTGGTTCGGCAACGGGTGCAGGAAGCTTAACCATCAACGAAGGAGCTTCAGGAAGTCAGGAAACTGAAAATAAAGGAGCTGAACAGAGGGTGATGGACACGTGGTCTCAAAAACGGAAATTGTCTTTCAAGGAGAACATTGAAATGGATACTTTTTCCCCAGAAGAGGCCAAGAAACGTTGTTTTAAACAAAAAGTTGAAGTGCCATGTGTACAGGCAGTTGAATCTCCCTTGAGCAACGTCTGTGATCAAGCCAAGTTCACTCCAGCCAAACTCAAAACGACTCAGTACGTTAAGGATGAAGACCTTGTACAACCATCTTGTGTAGTCATGTAAAATAAGCTTACAATTTGTACATTCTGGAAACAATGATATGGAAGTGGGTGGAAAAGGTTTTCTCCATTTTTAATTAATAAGCCATAAATGAGTAGGTAGCAAATATTTTGCACCCAAAGTGACAGCCAGGAATTGATCTTTTAAAAACATTGATGGGTTCTCTGTTTTATTTGCGTAGTTTTAAACAAGGAAATAAAATCACACTTTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TW28	Myosin-M heavy chain OS=Dictyostelium discoideum OX=44689 GN=myoM PE=1 SV=1
O94887	FERM, ARHGEF and pleckstrin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FARP2 PE=1 SV=3
Q91VS8	FERM, ARHGEF and pleckstrin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Farp2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005931 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0040.g107.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.