Gene detail

Detailed information of acyt_s0045.g41.t2 in Acropora cytherea

Genomic Location: sc0000045_pilon:790208...799658
NR annotation: XP_044182811.1, uncharacterized protein LOC114953234 isoform X5 [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0045.g41.t2

ATGACTGGCGAAAAGCCTAACCGTGGCTCTCTTTTCACAGCCCATCATTTTTTTACGTTGCTGAATTTTGTTATTGTGCTAATGATAACAGCCTGGGCTATTTATAATGTGCATTATTTGCGCGAAGAAATCGAATTCTTGAAGTCCAACATTCGGGATTCGCTGAAGGAAGACAAGAAAACAGCTTCGCAGCCGTTTGAAGATTTTGTCGCAAAGTCACGGAAAATCCGTCAGATGGAAGGAGGACATGGCATGATGTCGGCAACTCCAGACAGTGCGGGAGGCAGTCAAAACGTGACTCAGACTTTAGCTCCAGATGATGGTGGTGGAGGCGGTCATGAAATGATGACTATGGCTCCAAGAGCGGGAGAAGGCGGTCATGGCATGATGACTACAGCACAAGGTGATGGAGGAGGAAGCCATGACATGACAACTGCTACGGGGTCCCCACACGGTGAAATGGGTCCACAGGTAAACCAGGGTCATGGAGCAGTGACAAGTAGGAAAATCAATCAGACTATCCAACAATATCTCGAAGCTTACGCCCGGGAGCATTTCGGTTCAATGTTTGTGCCCGGTGCCCCAACTCCGAGTAACAAAACTGCTTTGCAATCTTTTGTTGACCAATCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGCAAAGAGGACCCTGGTCCACAGGTAACCCAGGGTCATGGAGCAGTGACAAGTATGGAAATCAATCAGACTATCCATCAACATCTCGAAGCTTACGCGCGGGAGCATTTCGGTTCAATGTTTGTGCCTGGTGCCCCAACTCCGAGTAACAAAACTGCTTTGCAATCTTTTGTTGACCAATCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGAAAAGAGGACCCTGGTCCACAGGTAACCCAGGGTCATGGAGCAGTGACAGGCACGAAAATCAATCAGACTATCCAACAATATCTCGAAGCTTACGCGCGGGAGCATTTCGGTTCAATGTTTGTACCTGGTGCCCCAACTCCGAATAACAAAACCGCTTTGCAATCTTTTGTTGACCAAGCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGCAAAGAGGACCCTACACCAGACCCTGGGCCCTCAGGACCACAGGGTCCACCGGGGCCCCCTGGTAATACAGGTGCCCAAGGGCCCCCTGGACAACCGGGTTCTCCTGGAAGTCCCGGACCACCCGGGGCTCCAGGAAGGAGAGGTCTACGCGGTCCTCAAGGTCGTCCGGGTCCTCCGGGAACGGGGGCGCAAGTGACTCAGCCGCAAGTTCCAGACAGCCAGGAGAGTAAGGAGAAGGGACCGTCGTTTGCAGGATTTTCAAAGCCCAACATTACTCTATCGCCGCCAAAATCATACTTAACTACGAAGGGAGAAACTATCCAACTACAATGCTATGCGGACGGAACACCGAAGCCAGAAATAATCTGGCTGAAAAAAGACAGCGGAAGAGCTTTGATTGGAAATGATCTCTTTTTAAAATCTGCGCTACCCGAGGACTCCGGAGACTGGACCTGCCGAGCGAGTAACTTCATGGGCACAGATACCGCTGATGTTGAGATTACCGTCGCAACCGAACCAAAGTTCATTGTCCCTCCAGTGCCAAAAATAACGGCATTTACCCAGCAAGTCACAGAACTCAAATGTGCCGTCACGGGGTCTCCAACGCCCAAAATAGAATGGCGTCGTCAAGGCAACAAAGATCTGCCAATCGGAAGACACTATATCCGCAAAAACAACCTGTTTTTGCGAAATTCAATCAAAGAAGATGAAGATATTTACATGTGTCACGCTTCTACTCCTGTTGGATCGGTAATGGGAGGCACTGAGGTCACGGTACTGACATATGAACCCGTGGAGATAACAACGGTACCCAAGAGTTTCGTCACAGTGAAGAATTTTGAGGCTCCCGTGCGCGTCAATTGCTCAGCACGAGGCGTGCCCCGGCCAAACATCACGTGGTACAAGGACGGTGTTGCTATGCCAACAAGAATAATTTCTAATGGCGATGAAGTGACGGCAGAGTTAAACCTAGAAAGGCTGCGTCCTTCGGATCAGGGAGACTACACTTGCAAGGGGGTAACCTCTTTGAGGCCAGATGACCCTTTCTCCTACACTACGTCCATACAGCTGAAAGCTTGCCGTGAACTACCACAACCCGTGGACGGTTACAAGCTGTCGGACAGTGGTCGTCCTGTGGTGGGAAGTATAGTGCGGTTCGCTTGTAATCCTGGGTGTATGCTGTACGGCTCAGCGACAAGGGTTTGTGGCAAAGACGGGCGATGGAGTGGAACACAACCATATTGTTACAACGTTGGAACAGTAGCCTATGAATGCCAGCACTATCGCCTTCTCTCTGACAGCGACAGAAACGTCAAAAGTGGATCTCTGTTAGGCAAATGCGACAACAACCTGGCGGAAGGCTGGTACCGATTCTCAGGCTCCGCTGGGGTCCAGATGCCCAATTCGTGCCCAGGCGCCGGCAAATGTAATACACAATATCCCGGATGGTTGTTCGGTTCGCATCCTCATAAAGATGATGGCTGCGTGTCAATGCTCGTCTGCTTCGGCGACTATATTTCAGGCTGCTGTCAGTATCGTCAGAGGGTCCTTGTGCGGAATTGTGGTGGATATTACGTGTATAAACTGAGTCCGACTGCTGGATGCAATTTCCGATACTGTGGCCGAGACGCCGGTCCAACGCCGAACACCATGGGGGGATTGTTGTGA

Transcript

acyt_s0045.g41.t2

AGTCGGAATATAATTGATACCCCTGAATGTCTATGTTTTGTAACCTAACACTAGTAATTTCTAGTGGACAATGCCTCTCTGTGATAAAGCATTCTTCGAAACGTCAAGCAAACAAGACACGACGATCGTGCACCAAGATGACTGGCGAAAAGCCTAACCGTGGCTCTCTTTTCACAGCCCATCATTTTTTTACGTTGCTGAATTTTGTTATTGTGCTAATGATAACAGCCTGGGCTATTTATAATGTGCATTATTTGCGCGAAGAAATCGAATTCTTGAAGTCCAACATTCGGGATTCGCTGAAGGAAGACAAGAAAACAGCTTCGCAGCCGTTTGAAGATTTTGTCGCAAAGTCACGGAAAATCCGTCAGATGGAAGGAGGACATGGCATGATGTCGGCAACTCCAGACAGTGCGGGAGGCAGTCAAAACGTGACTCAGACTTTAGCTCCAGATGATGGTGGTGGAGGCGGTCATGAAATGATGACTATGGCTCCAAGAGCGGGAGAAGGCGGTCATGGCATGATGACTACAGCACAAGGTGATGGAGGAGGAAGCCATGACATGACAACTGCTACGGGGTCCCCACACGGTGAAATGGGTCCACAGGTAAACCAGGGTCATGGAGCAGTGACAAGTAGGAAAATCAATCAGACTATCCAACAATATCTCGAAGCTTACGCCCGGGAGCATTTCGGTTCAATGTTTGTGCCCGGTGCCCCAACTCCGAGTAACAAAACTGCTTTGCAATCTTTTGTTGACCAATCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGCAAAGAGGACCCTGGTCCACAGGTAACCCAGGGTCATGGAGCAGTGACAAGTATGGAAATCAATCAGACTATCCATCAACATCTCGAAGCTTACGCGCGGGAGCATTTCGGTTCAATGTTTGTGCCTGGTGCCCCAACTCCGAGTAACAAAACTGCTTTGCAATCTTTTGTTGACCAATCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGAAAAGAGGACCCTGGTCCACAGGTAACCCAGGGTCATGGAGCAGTGACAGGCACGAAAATCAATCAGACTATCCAACAATATCTCGAAGCTTACGCGCGGGAGCATTTCGGTTCAATGTTTGTACCTGGTGCCCCAACTCCGAATAACAAAACCGCTTTGCAATCTTTTGTTGACCAAGCTGTATCAGCGTCTCTAACAAAGTACTTAGAAGGCAAAGAGGACCCTACACCAGACCCTGGGCCCTCAGGACCACAGGGTCCACCGGGGCCCCCTGGTAATACAGGTGCCCAAGGGCCCCCTGGACAACCGGGTTCTCCTGGAAGTCCCGGACCACCCGGGGCTCCAGGAAGGAGAGGTCTACGCGGTCCTCAAGGTCGTCCGGGTCCTCCGGGAACGGGGGCGCAAGTGACTCAGCCGCAAGTTCCAGACAGCCAGGAGAGTAAGGAGAAGGGACCGTCGTTTGCAGGATTTTCAAAGCCCAACATTACTCTATCGCCGCCAAAATCATACTTAACTACGAAGGGAGAAACTATCCAACTACAATGCTATGCGGACGGAACACCGAAGCCAGAAATAATCTGGCTGAAAAAAGACAGCGGAAGAGCTTTGATTGGAAATGATCTCTTTTTAAAATCTGCGCTACCCGAGGACTCCGGAGACTGGACCTGCCGAGCGAGTAACTTCATGGGCACAGATACCGCTGATGTTGAGATTACCGTCGCAACCGAACCAAAGTTCATTGTCCCTCCAGTGCCAAAAATAACGGCATTTACCCAGCAAGTCACAGAACTCAAATGTGCCGTCACGGGGTCTCCAACGCCCAAAATAGAATGGCGTCGTCAAGGCAACAAAGATCTGCCAATCGGAAGACACTATATCCGCAAAAACAACCTGTTTTTGCGAAATTCAATCAAAGAAGATGAAGATATTTACATGTGTCACGCTTCTACTCCTGTTGGATCGGTAATGGGAGGCACTGAGGTCACGGTACTGACATATGAACCCGTGGAGATAACAACGGTACCCAAGAGTTTCGTCACAGTGAAGAATTTTGAGGCTCCCGTGCGCGTCAATTGCTCAGCACGAGGCGTGCCCCGGCCAAACATCACGTGGTACAAGGACGGTGTTGCTATGCCAACAAGAATAATTTCTAATGGCGATGAAGTGACGGCAGAGTTAAACCTAGAAAGGCTGCGTCCTTCGGATCAGGGAGACTACACTTGCAAGGGGGTAACCTCTTTGAGGCCAGATGACCCTTTCTCCTACACTACGTCCATACAGCTGAAAGCTTGCCGTGAACTACCACAACCCGTGGACGGTTACAAGCTGTCGGACAGTGGTCGTCCTGTGGTGGGAAGTATAGTGCGGTTCGCTTGTAATCCTGGGTGTATGCTGTACGGCTCAGCGACAAGGGTTTGTGGCAAAGACGGGCGATGGAGTGGAACACAACCATATTGTTACAACGTTGGAACAGTAGCCTATGAATGCCAGCACTATCGCCTTCTCTCTGACAGCGACAGAAACGTCAAAAGTGGATCTCTGTTAGGCAAATGCGACAACAACCTGGCGGAAGGCTGGTACCGATTCTCAGGCTCCGCTGGGGTCCAGATGCCCAATTCGTGCCCAGGCGCCGGCAAATGTAATACACAATATCCCGGATGGTTGTTCGGTTCGCATCCTCATAAAGATGATGGCTGCGTGTCAATGCTCGTCTGCTTCGGCGACTATATTTCAGGCTGCTGTCAGTATCGTCAGAGGGTCCTTGTGCGGAATTGTGGTGGATATTACGTGTATAAACTGAGTCCGACTGCTGGATGCAATTTCCGATACTGTGGCCGAGACGCCGGTCCAACGCCGAACACCATGGGGGGATTGTTGTGAATTAGAATGGATACCCCATTGCAATATTAGACACTTCATGAAGAACATGTAAACAAGAGCGTTCTCTCTTTCGTTTCCAAGCTCTTTCTCTTCCCTTTGGTCCGGTGGGTCGTAGGAATTAGGACACACGAAAAGTCTTCGTAATCTTTTTATGGTGGCAATTTGACCCTTACTAGCTCAtttgtataggtaatcaaatgatttcgagtgcaatttggaataaataaccacgattaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NDA2	Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4
P70232	Neural cell adhesion molecule L1-like protein OS=Mus musculus OX=10090 GN=Chl1 PE=1 SV=2
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008072 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075 all species →	BASIGIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0070593 all species →	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632 all species →	Molecular Function	cell-cell adhesion mediator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0045.g41.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.