Gene detail

Detailed information of acyt_s0070.g93.t1 in Acropora cytherea

Genomic Location: sc0000070_pilon:1177018...1191088
NR annotation: XP_015770454.1, PREDICTED: WD repeat-containing protein 24-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0070.g93.t1

AGAACAGGCATGAAGTAAAGTGTATCAAGTTACAACGGAAGTGTCCATTTGACAATCTGTGGAAGGAGGGGTATGGGGAGAGAGAAAGTGTGTGGTCTAGACTCCCTCTGATTCTTTTCTTGTGTGGAGACTGAGTTTGCATCTTTTGAAGCGATGTCATGAGTCTTTGGGAACTTGTCGAGATGCCTAGTGCTCGAGAATTACAAGAAATGGCAAAGATCCAAGAAAAAGGGGTTGGTGTCGGGTCTCTTAGTTTCTCTACAATGTTTGTTAATGTTGATGGAGCACTCAGTTCATTAAGTACCTCTAAAGATGGATCACAAGTGGTGGTGGCTGGCAGAAATGTTTTCAAAGTGATAGGTGTTGAAGAATCAGGATTTGTTGAGAAAACCAACCTTCGCGTAGGAAGAATCAACCTGAACTTCTGTATTACTGATGTACAATGGCATCCAGTTGATGATCACATACTAGCTACTGCTGCTGGAAATGGTGCAGTAATCCTTTGGAATTTGAATAAAATTACCAAACAGAAGCAAGAGACAGTATTTTCTGACCACAAGAGGACTGTGAACAGGATTCAGTTCCACCCTTATGAAAAAGATGTTCTTTTGAGTGGATCACAAGATGGAACAATGAAATATTTTGATCTACGCAAGCAGAATGTTGCATCGACTTTCGATGGAAAATCTGATATTATCAGGGATGTTCAGTTCAACCCATTTGATGGACAAACATTTGCTGCTGCTTGTGAGAATGGAAATATTCAGTTGTGGGACAGTAGACAGCCAAGTTCACCAATCATCCAGTTCATGGGACACAATGGACCTACTTTTGCTGTAGATTGGCATCCTGAAGAGAAGAACTGGGTTGCATCCGCAGGAAGAGACACCATGGTTAAGAACGTATTTTGCATTCCTTTTTCCATGAAAAATGCTTTGCATTCATTCTTCATTTTCAATTTTTGTTTTGTAGATTTCCCGTTTAACGAAGATCAAGACGAAGTTCCATTTTTCTACGACGACTCAATCGCTCTCGGGGATGCTCCAAGAGACTGGACTCTACCCAGCGAAGCGTTCGAGCCTCGGGCAGCACTGGATGACAGACAAACAATTCCGTCTCTTGATCAGGAAGCGGAAAGGCCTGACTCGCCCACTAGCAATGTCGAATCTGAATCACTGAGTGCCATAAATGTTAAGTCCCTCATCGATTCAAGTATTGTCGAATTGCAAGAAACTTATTCGTCCTCCAACAAATCCTTGTCACTTCCTGAGTGGGATTTCACGTCACTTGTTGTGGAAGTGCTTCAGCATTTGGCAGATACGGGAGATGTGCAAATGTGTGTTTCGGCACTGATCGTCCTTGGCGAGAAAATCCGGGGTAGAATAGATGAGCAAACTCAGGAACATTGGATTATTTCTTACATTGATTTACTTGGCCGCCTTCAGTTGTGGTCCGTGGCGACACAAATCATTCAACTTTCCAGTTTGCCAGCAATCAGCTCATTAAATCAGGCCTCGACGACTGTGCACACAATGTGTGAGCGATGTTCCAAGCCTCTAACTAAGTCTGGTTGGCATTGTGAAAGATGTCGGAGCGTTGTGGCGCCGTGTTCTTTGTGTCATTTGATGGTAAAAGGCCCCTATGTTTGGTGCCAAGGCTGTGGTCATGGGGGTCACCTCAAACACATGAAAGAATGGTTCTCTAACCACATCTGGTGCCCAGCGGGCTGTGGGCATATGTGCGAGTACACGTGACCAGGCCAATCTCAGCCTACAAGTAGTTGTGAAGTAGACCATGACTGGGGGAGGAACGTGAGAGTAGAAAACATCGTGTACTGAGCCAGCTGCCCGAGAGGATCAACCGAGGGAGCAATCTGCGTTACTGGCCTTCCCTTCATGACCGAATCTTTAGTGTTAAAAAAAaaaaacctgtcaatctcacggatgacgtaaaaccaagaaaacaaaagagccaagagaccatttaacaataactaaacctcagcaagagctatcgtaacaagaaaaaaatatcacaggttttcacaccgaggaaacccTTGAAATAATGGTCCCCTGAAAACCACTTCAAGTTACTTGCGAAACTTGGCGTATAGTTTATAGCTTGAACACGCAGTATGTATAGAATTGCGATATATCAAAAAGTGGACTTGACCTTTTAGGGAATGGCTCTAATTCAGATATTCTAGAAATAGGGTGAGCTTCAATTCCACGTACTAAAAGCGCAGGCATACTTTAATTACTTACTCATCATCATCATATAATTAGCACAAAAAAATTCACCTTTTTAGGAAGGAAAATCAAACTGCCCACAGAGTACTACAATAATAGATTCTAATTGTTACT

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZX22	GATOR2 complex protein WDR24 OS=Xenopus laevis OX=8355 GN=wdr24 PE=2 SV=1
Q7ZVL2	GATOR2 complex protein WDR24 OS=Danio rerio OX=7955 GN=wdr24 PE=2 SV=1
Q8CFJ9	GATOR2 complex protein WDR24 OS=Mus musculus OX=10090 GN=Wdr24 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17120	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037590	Family	GATOR2 complex protein WDR24	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR049566	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46200	GATOR COMPLEX PROTEIN WDR24	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005774	Cellular Component	vacuolar membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016239	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700	Cellular Component	GATOR2 complex	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20408	WDR24, SEA2; SEA/GATOR complex protein SEA2/WDR24	-	Membrane trafficking	ko04131	deepkoala