Gene detail

Detailed information of acyt_s0076.g2.t1 in Acropora cytherea

Genomic Location: sc0000076_pilon:61371...67155
NR annotation: KXJ04865.1, Retrovirus-related Pol polyprotein from transposon 17.6, partial [Exaiptasia diaphana]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0076.g2.t1

CTTCAGCTGGTAAACTGTGCTATGAACGCATACTTTGGTGGACAAGTTTTGCCTGTCCTTTTCAGAGCATTTACAGATATTTAATTTTTAGTGGCCTTTTTTATATTGTCAAAAATGCTTCCAACAACCACTCAAATGACATAATTATGACAAAGCAAATGATATTGCCTGATAACTACCCAAAGAAAATAAATAATGTTCCACAGGAAAGCCCTGCATAGTGTGCAGTACCAAATCATTTATCACTGCCTACAAGACTGCTCCTGGGTTAGTTCATCCCAACTCACTTATAAACATGCTTCCAAGCATCAACTCAGATTTTCAGAAAGGAGAGCAGCTGTGCGCTGCCCAGTTTTTTCAAGAATTTTGCCGTGAGCTTGGTTACAAAGCCAGTGAATACCAAAAGACTGGTTTCATACCCCAACATATTGATCTGTCATTTCTAAAAATGTTTTCCTTCAATCTGAGAAGTGAAGTACTATGCTTGTGGTGCAACAACCTGACCTGCAACTCAACAATGGAAACTCTTTTTCCTTTTCATGTTGTAAAGATATGTTCTGTGTGACGACGTACAAGAAATACACTTTACATGATCAGCTAATCGCAGTACTGGGGACTTGATGACTGCAGCACTAACTGGCTAACACATTACATACTCTCAATGCTAGGCAGGGAAAGACAACATGTACTTGTAAATGCAATCCTAACAGTTAATTTTATTACAGTTCCTTGGAATGGCCACGCATTTCCTTCCCACAATTTTTACAACGTGGAGCTTTTCTGTTAGACTTATATGGCCTACTGACTTGAACTGTCATGGTTTCCATCATTTCGAAAAAACACTAATGAAACCAACAGCTGGGCAGATTTTTGCGAGGGTTGTAAACTTAAGAGATGGAGATGTCTGCTTAAGCCCTAGGACTCGAATAGGCGTTTTCCACGTTGCTGACCGTGTTCACAACCCCAAGCACGCAGTGGAAATTTCAAGAATTTCCGTTAACGAAGCTGAGGTGAACCTGAACAGTAACAAAGCCAAACAAACTAAAGCAACAAGTTGTCCCGTAGACCTTACTGATGTGAACTGTACCCCTAAGGAGAAAGAAGAATTAAGCCAGCTTCTTCTAAAGCACACAGATGTTTTCGTTCAGGAAGGTGATGAGCTTGGTTACACAGAAACTTACAAGCAAAGGATTCCTACTACCAATGAGATCCCTGTCTCCCAACCATTTCAAAGAATTCCACCTACACAGTACCAAGAAGTTAAGGACCACATCCAAAAGCTGCTTGAGGATGATATTATTCAAGAAAGCCACAGTCCCTATGCCTCACCAGTTGTTATACTAAGGAGGAAAGATGGCTTGATCAGAGTGTGTGTAGACTATCGCAAATTGAACATGAAAACCGTACATGATGCCTTTCCTTTACCAAGAATTGAGGAGAGCCTAGGTGCAGTGGGCAATGCCAAGTGGTTCAGTACCCTGGACCTGGCTAGTGGATTTAATCAGGTGGCTATGGACCCGGTGGACAGACACAAGACAGCATTTATCACCCCATTGCGTCTGTATGAATACAATTGAATGCCCTTCCGTTTGACCAATGCACCAGCTTGGTGCAAGATCAAAGAAGCCCAATGAGCGCAAACAGCAATTAGACATGCTGAACCGCCTTCAGAGCCAGGACGGCAAAAAGCCACATCGAGCCATGGAAGTTATGTCCCTCAACAGTAAGATTGAATGATCTGAGACCGCCATAAAGAAACTGAGGGCACACATCAAGGACGGAACCTGTCCTAAGACTCTTGGATATAATGTACGTGCAAAAATCACACTGGACAAATAATTCAAGATCGAAATAGGCTCGATAAGAAGAACTGCCGAACAGGAATTTATTCGCTCTTTAGCAAAATTCTACCAGAGGCGCATTGAACACTTACAAAGTAGACACACCAAGGTTGAGCAGGAACTATCTCGCGAGAAAAACAAAACCAATGCTTTTCAAACTAGAAAAAGCAGGGCGCCATCGGCACCTAGAGATGAAAATATACACATGAGTACTGATGTACGAAAGTAAGCATCAAATATCCAATTCAAGATTGACAAGTTCATGCAATTACTGTCAAAGATTGATGATTCTAAGAATAAACAAAGTAAATCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for acyt_s0076.g2.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0076.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.