Detailed information of acyt_s0097.g105.t1 in Acropora cytherea

Genomic Location: sc0000097_pilon:1086412...1118099
NR annotation: XP_044184368.1, structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X2 [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6NHR9Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SMCHD1 PE=1 SV=2
Q6P5D8Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Mus musculus OX=10090 GN=Smchd1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002050 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06470
all species →		SMC_hingeSMC proteins Flexible Hinge DomainDomainInterproscan
PF13589
all species →		HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036890
all species →		Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR010935
all species →		DomainSMCs flexible hingeInterproscan
IPR036277
all species →		Homologous_superfamilySMCs flexible hinge superfamilyInterproscan
IPR038892
all species →		FamilyStructural maintenance of chromosomes flexible hinge domain-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22640
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0005694
all species →		Cellular ComponentchromosomeInterproscan
GO:0051276
all species →		Biological Processchromosome organizationInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23113SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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