Gene detail

Detailed information of acyt_s0113.g28.t3 in Acropora cytherea

Genomic Location: sc0000113_pilon:454363...482622
NR annotation: XP_029194549.2, uncharacterized protein LOC114960355 isoform X5 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0113.g28.t3

GTGGTTTCTTGGCCGGTATCTATGCTGCTAAGTACTCCTCATTGCTTTCTTCCTTGGTCCTGATCTGTCCAGCAGGAGTAAAAGCTCCTAGGCTAAGTGAGTACATCATGGAAGTTGCCAACGGGAGAAAAAACTATTTACTGCCAAAAAACCCGGACGATTTCCGTTTCATGTTAAAGAAGATTTCTCATCGTGACGTCTTTATACCTTCCTTCGTCATCAATATCATGAGCGCAGCGAGACAATCAGCGCATGAATTTTATGAAAAAGTTATGGCTGAACTTTCTCATCCGGATCAGAGATTTCTTCTTGAGAAGTTTTTGGAAGACATTAATGTTCCTACTCTGACCTTGTGGGGAGACAAAGATAAGATTCTTGATCGCTCAGCCGTAGATATCATCGCAGAGAAAAGATTTCTTCTTGAGAAGTTTTTGGAAGACATTAATGTTCCTACTCTGACCTTGTGGGGAGACAAAGATAAGATTCTTGATCGCTCAGCCGTAGATATCATCGCAGAGAAAAAAGCCATTACATGGGTTGATGCTGATAAGAAGATAAGAGACGGGATATCGGGAAAGCAAAGTCAACAACGACAAGTCTCCAGCCTCGTGAAAGATGAATTTCCTCGAACGAACTCAAGGCAAACAAGCCAGACAGCTCTTGATGAGGTGATGTTTTCGTGTGCACTGCCTCCTTGTTCACCGACTAGAAAGCAATCGAAAATCGCCAGGGAGAGAGAACGGAAGAAGTCTCTTCAGAAAGGGAAGGATCGATACAACATCGTCAAAGGCCTTGCCGAAGGTATCGATGGAATTTCCTTTGAAAGCCTGCTGAAAAGACGGCATTACCTTCGGGCGAGAAACAACTATCTTATTTTGGAGCCTTTTGACGACTCAGATGACTATAGAAAAGAAACCACATTTCTTCCGCTCCAAGACATGTGGTTTGAGGGTTATTTTGCATTCGAATCCATGTTGAATCCTGCATACTTTATTCGTCGATGCGGAGAGCAGCTTCTTTTGCAAAAATACGAAAACTCTCACTTTTTTAAAGAGGATTCCAGCTTTAAGTTGACCAGGAAGCGATGTATTGCTTGTGTACATGTAGGCTCGCGAGTGTGGGCTCGTGCCGAGAAAGGATGTTTCTTGCGAGGCATTGTGACTCAAATGGACACGGAAGATATTTACATAAAGCTCGAGAACGGAAGGAAAATCAAACACAAAAGAACTCATCCGGAATGCGTAGTAGCAGACGCTGTCCCACATACAATGGAAGTTGAAATCGGCACAAGGGTGTTAGCCAAATGGTACAATCGGCTGGATACTTATTACCCAGGAACCGTAGTTGCAATTCGTCGAAGTTTCTTTGATGTTCGGTTTGACGATGGGGACAGAGGATGCAACGAGTTAAGGGAATTGAGAATTCTTCGACAAAAGGACTTAGAAGAAGATGCTAGAAAAGCACTTTTACCGCCGTGGTCATCCTTGGATGGAATTCCTCGCATAGGGGGGATATGCATCGACTATGGTGAATTACTGGAAACAAGTCCGAGCATGCTAAACAGGGAACTTCCTGACGGTAAAGTAACAGTGGACTATGAAAGCATGTCCCCTCTCGACTCCCCTGTGGAGCGAACTTCTAGTACCTCAGAACACGCTGATACGGCAGATTTAGAGGACACGGATCATGTAGAAAATCACACGATGGCTAACAATCACCATGGCGACATGAATCACGACCACGATGATGGAGTATTTGGTTTTGAGAACAATTACCAGCATCTCGCCCCAGAGCTCTCCAAAGGACAGCCGAGAAATCCGAGCCAGGTCAGTGGCAGCTCAACCGACAGTGGTTACCATGGAAACCATCATCGTCAGCGAAAGACCGGTTTGTGGACGGTGGCCAATTCTGGCCCTGGGCGCGCGGTCCCGATGTTCAAGGTCGAAGAGTACACGTGGAAAAAAGAGCAGGAACATGAAAATGAGGCTGGATTACGAGAATCAAACAGCAGTGAAGAGATTCATGGCAGACACCAACTCCCCAATGGACCTGTGGGCTTGGAAACAGTTATTTAGATTGCCTCTCGTACACCCAGCGTACGCAAAATTGCTAAAGAAAAAGAGTTGAGCTCTGTCTCGCTTCCAAGAGCATTGCCAAAAGCCCTCGACTTCAAGATGAGGTTACTGAAACCAACGGTTTCAACCATACGTCATATAAGAGCCATTCAAATTTACACTGTTTTTCGAAGGCGTTATTGTCACCACCAGTTTACCAAATTCGTGGAAATGGAATCATGTCGAAGAATAAAATGACAATAAAACGGATGTAAGGACGGCGAAATTATAGTCTCGCTCCCAGACAACATCTGTCAACCCTGGAAAGGATGTGAAAGATACTTGGCAAAATGTATGTACGGCACGGACCAAATCAAGATAAAGGCATATTCGATGCACACAACGATGCATAAGAAATTTGAAAAAGGATGGAACATACTAAAGTATAGATTGATCCAAATCAAATGTTGAATAAAAAATGGTTAACTTTGTTGTCAGCAATTAGTTTACCAGAATGCATGCGCAGATAATTAATCCCTTAATGGTAtttagacagaagcaagcgaatattaaagttaatagccgacg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF21744	BAHCC1-like_Tudor	BAHCC1-like, Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR048924	Domain	BAHCC1-like, Tudor domain	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14845	RAI1, DOM3Z; RAT1-interacting protein	-	Ribosome biogenesis	ko03009	deepkoala