Gene detail

Detailed information of acyt_s0117.g54.t1 in Acropora cytherea

Genomic Location: sc0000117_pilon:908240...920999
NR annotation: XP_015767028.1, PREDICTED: nucleolar protein 8-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0117.g54.t1

CTTTCTTCTTAAAGAGCAATCGAAAATGGCGGACGACTCTACGAGGAATTTTTATTTTTTCATCTCTAAAACCTTTGCTGTTATTTGTACTTGGTGTTCGCAACTAGCAGTATAGGGCTAGGGTTAGAGATATTTCTGTAGGTATATTTTGAGAATTACAGGTTTATTCTTCGGTGGTATCAGTAGCAAGAGCTTGGTACGGGAGTTCACTCCACGTGTTTTTCATTTCGACGTTCGTTAAGTATTTTGGTCAGTATTTGGGGAAATCATTGGAGTTGAGATGGAAACGAAGAGATTGTTCGTTGGTGGACTGTCTAGTGATATCAAAGAAGAGGATTTGAGAGCTCGTTTTGCATCTTTTGGGACTGTATCATCTGTTGAAATTGTTCGCAGAGCAGATGATGAAGGTCATTCATTGAAGACATTTGCTTTCCTGAATATAAAGCAAACAGAAACTGACTTTCGAAGATGTACCTCCATTCTAAGTGGCACAAGGTGGAAAGGTTGTTATTTGAAGATACAGGCTGCCAAGGAAAGTTTTCTCTCAAGGTTAAGCAGAGAGAGACAAGAAGAGAATCAGGCAAAGTTAGAATTTGACAGCAAAGAGTCAAAAATGTTGTCACAACTACTTGGAGATAAAATGAAGCAGAAACTTTCCAATGATAAACGACTCGATGCCTTAATGGAGAAAAGGAAGAGCGTAGCGGCTCACAAAGATATTATTAAAGACGCCTTGAAGGATCTTGACAGCTCAAAGCGAAGGCATGGTGGAAAGAAACACATTGTCTTTGATGATGATGATAACGAACACGATGTGGAAGACGGAAATAGAGACCCAGTTAGGCGTGAAAAGATTTCAGGATCGCAAGCAAGTTTGTGGCTCGGTTTGGGTAATTGCAGTGATGATGAGGACCCTCAAATGACTGAAGACTTTGACGTCAACCTGGTTATAGAAAAACCACATTTTGAAGGAAAAGCGGGTGAACAGCTATTCAAGTTGCAAAGGAGATTCGGCGGTGACAAAAGATTTGATCTCAATGAACGTTTTCTGGAGAGCGACGACGAAAATGAGGTCGCTGAGGATGATAATCATTTGAACGCGAAAAACAATCTTGTGGAATCGAAGGACTCGAGTGGCAAACACGGAGAAGAAGAGCATAACATCATAAACCTGAGGCAAGAAAAAGAGATGGAACGTAAAGTACTTGGCAGTATCCTGGGTGAAGATCTCAGTTTAGGGGTTGGCGAGAAGGAGTTTGGAGAAGAGAATTCCAGATTCAGGAGCTCGGAGACAGTTCGCTATGATCCAACTCGTGAGGACCACAAACAATTCgaacaagagaagaaagaaccagagaagaaaaagaaaaaggagacgaaaaaggaggacaaacaacaagagcaacaggagCCCGTGTTACCTAAAGTATCTCAAGAGAGGTATCATAGTGTGGAATCAACTTCGTTGGCTGATCGTTTTGGAAATAAGAATCAAGGTTCGTCTGGTTTTAGCTTCCTTTTTGAAGAAACTCAACAGAATGAAGACTCAGCCAGTACCAAGCACAGTGATATTGGAGCCGCAGAAGAGCTTATAAAGAACCCTTTTCAAACTGCCTTGCAACTCCCGTACGACAGCAGTGGAGAGAGTGAGGAGGATGGAGAAGAGGACATGATCGCTGATACGGCTGTTTCCTCTGAGAGCCAACCATTCTGTTCGTCTATACCCTTTGATGAAATGTTTTTCTTCCATCCTGGCGATCCCCAATTAGTTAATCGAATCAATGATGAGTTTGAGCCTTTCGTGCGAACGGGAAGCATAGATGATGTTCGTTCGAACTGGGAGTCGGTGAGAGCTGATCTTAGGAAGGACTACAAACGTAAGCGAAAGAGCGCCGAGAGGATGCAAAGGAAACTGGGTCCCAAAAGGACTCGGATCAGGTGAAAAGCAAAAAAAAAAGGGAAAGAGGAAACAGTGTCAACAGAACCTTCGGGAGAATACTCTGTGCCTCTTAATGAAGGTTTGTTCACACAGAATCGTTCAGATATCATCGCAGATGCGAGAAATAAGGACGTTTTTAACTGAAGTAACGTAAGCAGCGGAAAGGAAGCGTTACGGTGAACTTTTGTTCTCTAGAGTGAAGACCACTTCTGTGAAGCAAACAAAAGCACAAAAATTTACGAAGGCTACGCGACAACGATCTGACATGTTTACACTTGTCACTTCGGCCTCATTCCCGTTACGAGATCCTTGTGTTTTCCTCACGGCTTACCGAATTGATCGAAGGCTCTAGGCACTAGAGTACTTTTATCCCCGTAAGTCATTTACTGGGCTTTCGCTTGGGTCGACGTCTCTCGGACGAAAAAGCGATTAAAAGAGTTGCAAACAGCAAAGATATTTACGATACCTCATGGTATTAGTAAAAAGCTGTCTTGCGTGAACACGAGACACATGAAGACATGAAAAAATGACATTTGAATATCGGAGGAATGATCATCTTCTCCGGCAGCTTGAAATGCAAATACAAAAGCTTCTTTGATGCTTTGCAGATCTGAAAATTGTATCTCCAAAAGATGTACAAGCGAGGAATTGACTTTCCATTTGTTTTCAAATGAATTTCTTTCCTCAACTGATCATTGTTCCACAATTAAGGAACCTTAACGCATAGTTAGAGAAAGAATCTTTACCAGAAATTAGCCTTAAAGAAAGGTGTAGGTAAAAT

Protein

Uniprot

Uniprot term	Description
Q9VWD4	Probable RNA-binding protein CG14230 OS=Drosophila melanogaster OX=7227 GN=CG14230 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034138	Domain	Nucleolar protein 8, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48029	NUCLEOLAR PROTEIN 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14836	NOP8, NOL8, NOP132; nucleolar protein 8	-	Ribosome biogenesis	ko03009	deepkoala