Gene detail

Detailed information of acyt_s0121.g17.t1 in Acropora cytherea

Genomic Location: sc0000121_pilon:184396...196260
NR annotation: XP_029196521.2, DNA-directed RNA polymerase III subunit RPC3-like [Acropora millepora]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBL4	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1
Q9BUI4	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1
Q5XIL3	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005794 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20912 all species →	RPC3_helical	DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain	Domain	Interproscan
PF05645 all species →	RNA_pol_Rpc82	RNA polymerase III subunit RPC82	Family	Interproscan
PF08221 all species →	HTH_9	RNA polymerase III subunit RPC82 helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039748 all species →	Family	DNA-directed RNA polymerase III subunit RPC3	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR008806 all species →	Domain	RNA polymerase III Rpc82, C -terminal	Interproscan
IPR013197 all species →	Domain	RNA polymerase III subunit RPC82-related, helix-turn-helix	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12949 all species →	RNA POLYMERASE III DNA DIRECTED -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03023	RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.