Gene detail

Detailed information of acyt_s0122.g16.t1 in Acropora cytherea

Genomic Location: sc0000122_pilon:229046...269487
NR annotation: XP_029188828.2, uncharacterized protein LOC114956004 [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0122.g16.t1

ATGGCTGTCTTTGAACCAAGCGGGGCACACGTGCTTCACTCGATGAAACCGTGCGATTTGTCATGTTGCACCAAAAGCGAGATCAAGAAATACTTTCAAAATACTTATGATCTATACGAGACTCTGTTCAAAGCACTCAAAGATGAGTCATCATTTTATAAGTGCCCTGATCGTCTCCGTCTACCTCTCATATTTTACTTTGGCCACACTGCTGCTGTTTATGTCAACAAACTATTTCTTGCAGGACTGTTAAAGGAGAGGATAAATTTTGCCTTTGAGACCCTGTTTGAGACTGGTGTTGATGAGATGTCATGGGATGATGTGGAAAACTATCGAATGGGAGGTAGTTTTGTGTGGCCAAAGGTCTGGGAAGTAGCACAATATCGTCAGAAAGTACGTCAAGCTGTTTTGGATGCAATTGAGGACACACAACTGGAACTGCCAATAACACAGGAAAGCAGATGGTGGGCTGTTTTCATGGGACTTGAACATGAGAGAGTCCACTTTGAGACATCATCTGTTCTGATTCGTCAGATGCCATTAGAACTTGTCAGAAAGCCTGAAGGATGGAAATATGGACCAGTGACAACAGGCGTTCCTGTGTTGTCAAATCCCATGATTGAAACAGAGGAACAGTCTGTAAGCTTGGGAAAGCCAGGAAACTTTCCATCGTATGGCTGGGACAATGAGTATGGTCAGTGGAATGTCAAGGTACCACCATTCAAAGCATCCAAGTATTTGGTGACTAACCAGGAATTCTTGGAGTTTGTTAGAGATGGTGGATATGAGAATTCTAAGTACTGGACGAAAGAAGGCTGGAAGTGGAAACAATTTCGCAAACAACAGCATCCCACTTTCTGGGTTTGTCAAAACAAGTGTCAATCAGGGTGCGGTTCCGACTTGTCGACCTACTCACACTGCAACCCACGAGTGATAGATGTCAATCAAAAGGGCATGAGGGACAGTTGGATTTGGAACGGAGATCAAAATGGTGTTGTCAACGTCTACTACAAAGGAAACGGTTTTTTAGATCGCCCTGGTGGCATTGACAGAGATGTAGACATTGATTTGCATAATGGTGGCTGCAGAAAGAAATGCTGTCCTTACAAATTACGTCTTATGTTTGATGTGGTTGATTTACCAATGGACTGGCCAGTTGAGGTGAATTATCACGAAGCCAAGGCTTTTTGCTCATGGAGGGGCCCAGACTTCCGCCTGCCAACAGAGGCCGAGCACCATGTTATGCGAGGACCTCAGGTCTCTCCTACCATCAGTACCAAATGCGATATCATTTTCCAAGACAAAGTAAATGCCAACATGAACATGACCTATGGTTCCTCTACTCCTGTCAACATGTATACACCCTCAGAAGCTGGCTTCTGTGATGTTTTTGGGAATGTGTGGGAATGGGTAGAAGACCACTTTAATGGATTTGAAGACTTCAAAAGTCATCATCTATACGCGGATTTTTCAACACCGACCTTTGATGGAAGGCATAACATAATAATGGGTGGCAGCTGGGTTTCTACTGGAGATGAAGCATCGCGTTTTGCCCGCTATGCCTTCCGTCGCCATTTCTTTCAGCATCTTGGTTTTAGAGTGGTTAAGTCAGTTGGGTATAGTGTTCCTGTGCACTTGGTTGGTACACCTGTGTTTGTACTAGGCGTTGGTGTGGAAGACAATAAGGTCACACTACCTGGCACTGTTGAAAGCAAGGCTTATATCAGCACCACAAACTCACAGTATTTAGATGATGACATGGAGTTTTTGCACCAAGAAGTGTTGTCCAGCTTTGGAGATCTCATGGGAGTTGAAAGTGATGCCGAAAGCTATAAACATCTTGTAACTGCTTGCAAAGAAGCTACACGGAAGTTTGAATGCCCAGTGAAGAAGGCTTTGGACATAATGTGCTCAGTTGGTCGGTTTTCGTATGAACTCAGCAAGGATTTTGACGAGGTTAGTGCTATAGACCACAGTGGTCGCCTGATAGACGCTGCCATCAGGATTCAAGAAGGAAAAGTTCTGAATATTAAGGGTGCTGGAGAGTTGTTGAAGGTCAACATTTCATTAGATGAAATCAAGCCTCACATTGATCGAGTAAAGTTTCAGCAGCTCACCTGGCTACCAAATGAGATTGGTATATTTGACTTCATTATTCTGTCGCAGCTTCATCGCCTGTCCAACCCGAAAGCCTGGCTGATTCGCTTGTGGGAGATCATTGACCCAAAGGGACTGCTGATGATCAAAACCAATGCTCAGTGGGATATAGAAGCTCTCAAGGCAATACTAGGAAGCAAATTTAAACTGTTGGAGTCAGATGTTGCTTCAGAAACAAGGGAGGGGCTGAGTAAATGTGTCAGGAGTCAGTCAGACATCAGCATATGGCGTTTGAAGCATTGA

Transcript

acyt_s0122.g16.t1

CAAAAGCCCACAGTTTCTATTTTCCGTCTAAGTGTACTCCTTCTCATTCAATGGACGACAAATTTAGCCTCCAAATAGGGAAAAGCTAATAACTGTACTTGCTCTTCAACTCAGCACAGAACATTCGGGCATCCATGGCTGTCTTTGAACCAAGCGGGGCACACGTGCTTCACTCGATGAAACCGTGCGATTTGTCATGTTGCACCAAAAGCGAGATCAAGAAATACTTTCAAAATACTTATGATCTATACGAGACTCTGTTCAAAGCACTCAAAGATGAGTCATCATTTTATAAGTGCCCTGATCGTCTCCGTCTACCTCTCATATTTTACTTTGGCCACACTGCTGCTGTTTATGTCAACAAACTATTTCTTGCAGGACTGTTAAAGGAGAGGATAAATTTTGCCTTTGAGACCCTGTTTGAGACTGGTGTTGATGAGATGTCATGGGATGATGTGGAAAACTATCGAATGGGAGGTAGTTTTGTGTGGCCAAAGGTCTGGGAAGTAGCACAATATCGTCAGAAAGTACGTCAAGCTGTTTTGGATGCAATTGAGGACACACAACTGGAACTGCCAATAACACAGGAAAGCAGATGGTGGGCTGTTTTCATGGGACTTGAACATGAGAGAGTCCACTTTGAGACATCATCTGTTCTGATTCGTCAGATGCCATTAGAACTTGTCAGAAAGCCTGAAGGATGGAAATATGGACCAGTGACAACAGGCGTTCCTGTGTTGTCAAATCCCATGATTGAAACAGAGGAACAGTCTGTAAGCTTGGGAAAGCCAGGAAACTTTCCATCGTATGGCTGGGACAATGAGTATGGTCAGTGGAATGTCAAGGTACCACCATTCAAAGCATCCAAGTATTTGGTGACTAACCAGGAATTCTTGGAGTTTGTTAGAGATGGTGGATATGAGAATTCTAAGTACTGGACGAAAGAAGGCTGGAAGTGGAAACAATTTCGCAAACAACAGCATCCCACTTTCTGGGTTTGTCAAAACAAGTGTCAATCAGGGTGCGGTTCCGACTTGTCGACCTACTCACACTGCAACCCACGAGTGATAGATGTCAATCAAAAGGGCATGAGGGACAGTTGGATTTGGAACGGAGATCAAAATGGTGTTGTCAACGTCTACTACAAAGGAAACGGTTTTTTAGATCGCCCTGGTGGCATTGACAGAGATGTAGACATTGATTTGCATAATGGTGGCTGCAGAAAGAAATGCTGTCCTTACAAATTACGTCTTATGTTTGATGTGGTTGATTTACCAATGGACTGGCCAGTTGAGGTGAATTATCACGAAGCCAAGGCTTTTTGCTCATGGAGGGGCCCAGACTTCCGCCTGCCAACAGAGGCCGAGCACCATGTTATGCGAGGACCTCAGGTCTCTCCTACCATCAGTACCAAATGCGATATCATTTTCCAAGACAAAGTAAATGCCAACATGAACATGACCTATGGTTCCTCTACTCCTGTCAACATGTATACACCCTCAGAAGCTGGCTTCTGTGATGTTTTTGGGAATGTGTGGGAATGGGTAGAAGACCACTTTAATGGATTTGAAGACTTCAAAAGTCATCATCTATACGCGGATTTTTCAACACCGACCTTTGATGGAAGGCATAACATAATAATGGGTGGCAGCTGGGTTTCTACTGGAGATGAAGCATCGCGTTTTGCCCGCTATGCCTTCCGTCGCCATTTCTTTCAGCATCTTGGTTTTAGAGTGGTTAAGTCAGTTGGGTATAGTGTTCCTGTGCACTTGGTTGGTACACCTGTGTTTGTACTAGGCGTTGGTGTGGAAGACAATAAGGTCACACTACCTGGCACTGTTGAAAGCAAGGCTTATATCAGCACCACAAACTCACAGTATTTAGATGATGACATGGAGTTTTTGCACCAAGAAGTGTTGTCCAGCTTTGGAGATCTCATGGGAGTTGAAAGTGATGCCGAAAGCTATAAACATCTTGTAACTGCTTGCAAAGAAGCTACACGGAAGTTTGAATGCCCAGTGAAGAAGGCTTTGGACATAATGTGCTCAGTTGGTCGGTTTTCGTATGAACTCAGCAAGGATTTTGACGAGGTTAGTGCTATAGACCACAGTGGTCGCCTGATAGACGCTGCCATCAGGATTCAAGAAGGAAAAGTTCTGAATATTAAGGGTGCTGGAGAGTTGTTGAAGGTCAACATTTCATTAGATGAAATCAAGCCTCACATTGATCGAGTAAAGTTTCAGCAGCTCACCTGGCTACCAAATGAGATTGGTATATTTGACTTCATTATTCTGTCGCAGCTTCATCGCCTGTCCAACCCGAAAGCCTGGCTGATTCGCTTGTGGGAGATCATTGACCCAAAGGGACTGCTGATGATCAAAACCAATGCTCAGTGGGATATAGAAGCTCTCAAGGCAATACTAGGAAGCAAATTTAAACTGTTGGAGTCAGATGTTGCTTCAGAAACAAGGGAGGGGCTGAGTAAATGTGTCAGGAGTCAGTCAGACATCAGCATATGGCGTTTGAAGCATTGATGTGGTTTCAGTGCTGAGAGTAAAAGACTTTTCAAAACTGACAGAACCATTTAGCCACTTATTATAATTTAGTCAACAGTATTAATCAGTTTACATGACCCACTTATCCATAAACCCATAAGGATTGCGTGATGGGAACGTGACACAGTGACTGAATTCCTCTGAAGCAATCCTTTATAATCAAGGTTACATAATAAAGGCCATGTCCTCATGATGGTTGCGTTTCTTCTGCGCAACTTAAATATTCTGGAGTCTTGCACAAATAACCTTAGGCATTTTTTGGAATTTCTCGGATTTGTCCCTCTTTCTTGCAAATGTTAGGAAGAAAAGAGAAAGAGTCCTGTTTGGAACAATAAAATAGTAAACGAAATATAAATTTTTTTTTTCGATtaaagtaaataaataaaaaaataaGGTTCAGACGGAAGAATTAAGTTCTTTGCTTTCATAGTTTGAAAATTATAAAACATGGAATAAGATGCTATAAAATGGCATGACTAGGAAAAGTTTGGAATTTACAACTCGCAAGACCGGCAACCAGTTTGATATTTCATTCATTTCACTCCGTTGTTTAAGCCTTAAAGTTCCTATTTTTCTAATTCCAGTTTTCCACTTTCTTCATGAAATGGAACAATATTCTGCATATAATGGTTGTAAAACGGTTTCCTAATAACGTACTCAAGGGAGGCGACAAAGCGTATTTTCACATCACTTCTTTAGTAATTAATCCGTGAATTGAATGTTGCTAATGATATTTTGCTACTTATGTTTCACGCAATAAACTATGGAGTCTCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94632	Ergothioneine biosynthesis protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=egt1 PE=1 SV=4
Q7D513	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=egtB PE=2 SV=1
O69671	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=egtB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002410 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12867 all species →	DinB_2	DinB superfamily	Domain	Interproscan
PF03781 all species →	FGE-sulfatase	Sulfatase-modifying factor enzyme 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027577 all species →	Family	5-histidylcysteine sulfoxide synthase	Interproscan
IPR024775 all species →	Domain	DinB-like domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR005532 all species →	Domain	Sulfatase-modifying factor enzyme	Interproscan
IPR042095 all species →	Homologous_superfamily	Sulfatase-modifying factor enzyme superfamily	Interproscan
IPR051043 all species →	Family	Sulfatase Modifying Factor and Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23150 all species →	SULFATASE MODIFYING FACTOR 1, 2	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for acyt_s0122.g16.t1 in Acropora cytherea.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0122.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →