Gene detail

Detailed information of acyt_s0124.g15.t1 in Acropora cytherea

Genomic Location: sc0000124_pilon:157887...163935
NR annotation: XP_029205179.2, THO complex subunit 7 homolog isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0124.g15.t1

ATGACCATTTTCCATTTGAGGCTCCAAAAACCCTCTGAAATCAGTTCCATCATAGCTCCATCGTGCACCATATCCATCAGCATGCCTCACTTCTATCACTTGCAGATCATGTGGTAACTGGTGAATGTTAATCCATGAGGCATCCTCCAATATACGCCAAAGAATAGAATTAGCATGCTCATTCTTTGCTTCCTCGCTTCCAACACAAACACCCCACCATTCGCCTGTCACATCCCTGTGGCAGTGCTTTGACAAGGCCCTAGCTCCAACAGTCAGCTTTGCATTTGGTTTGTGTTTCTTGTTAAATGATGCTACAAGAGTTGATATTGGAGGTGGAAACCTGTCAACACTTCCTTGGGTGTGGCGGATGTTCAGTAAATAAAGAAGTCCTCTGATATCAAGTATTTTTATAATAGATGTTAATTCATCAACTTTTTCATCACTGGAAATCCCAGTCCAAGACATCTTTAGTTTTGTCAACCGTGGTATGATTTTTTCTGACATCTGTGTTCTTTTCTCCGTAGAGCCGCCCTCATTTAAAATACCACAGTCTTCAGTTTTCGTTGGAAAATCTTCAACTTCAATATATTCCCACAGCTTTTTGGAGATTTCAACATACAAGGGGAAATGTGGATAGCCCTTCGATGAAAGAGGGGTTGATTCCTCTGGAAGAAGCAGGGCATTGCAGTGTTCCTTTGATAACAAACCATATGTCTTCCGTGACTCCTTTTCCAATATACCTTTCAAAATTGAACTTACAGAATGGACAGACAACATCTTCGTTTCTGGGGAATGAGACGCTTCATTGGGACATACACAACAACCCCTTTCAAAGTTAGAGCCAGTCCTCCATTCGAGTTACTTGCTTTCAAAATGGCGTCCGACGATGAGATTATAAGAAAGAGGTTGTTGATCGATGGTGAAGGTGCAGGCGACGATCGCAGGATCACGACACTTTTGAAGTCATTTCTGAAATGGTGTAATTCATCCAACCTTGAAGAAGGCGAGAGTGATGCAGCTTATCAGAAAATCCAGTTGCAGCTTGCTCAATGTGAATTTGCGATACGAAAAACTCAGACTGTATTTGAGATGAACGAACATGAGACTGAAAACTACGAGAAAGTTTATGATGAGATTGAACAAAGTATCACACATGCCTATGAAGAAATTGCAAGTTGTAAGGCAGAGCTACAGCAAGCCAAACGAATACGCAGAAACAGACAAGAATATGATGCTCTTGCAAAAGTCATTGCCAAGCACCCAGAAAGACAAGAAACACTCAAGCAAATTGAAGAACTTGATAAAGAGCTCAATTCACTCACTGGAACGAAAGAGAGTCTTTTGTCAAAGCTGGAACTTAGGCAGAAGCAGTTTCACCTTCTTATCAACACGATTCATGAATTACAACGAATGTTGGAAGAAGACAAGACAGATTCAGAAGGTGAACCATCATCTAGTTCTGTTGCTGAAGGATCATTTATGGATACAAGCTAGTTAAAAACACCCACTATCGTTGTTTTTGCTCTATGATCTTGTACATAGTCACGTTGCAGCTCTCTGTAGGAAGTAAGTTAGTAAGTAGTGTGGTAAATATTCACCTTAGCTCTAAGCCTACCTTGTAGTCACGCCCGGAGAAGGTTTTTTCAGTCCAAGTGGTTGGCACTAGCTACAACTGATGGGCATTATTGTCGATAAAACTGTGAGAAACTGACAATTCTTCAACCATTACCGACAATTCTTCATGAAAGATAGTTAATCGACAAAATCCGAAAGCGAAAATGTCGACCTAAAGCAGTGCCACTTTGCCGCCGCTTCACGCGGGCGGCAAGTTTTTCCCGCCATTTTTCGAACGGCCGTATGCTGCGGAAGTTGAAAATTGTGCAGATAGGATCGTGATTTCCGGTGCTTTTTATTGGAATGTGGACTAACTAAAAACAGTGCTGGTATTCAGGGATATTTCCTTATATTCCTCGAGTGTTTAGATCAGTCAAGCCTGTTAACTTGTGCGAACGAAACTGTACTTGAATTTCGTACTTTTTGTCGTATATTCTAGCGCGATGTTGTTTAAAAAAATGTGAGTTCGATTTGACGGAGACGACATCGAGGGCACCACAAGCGATGGCTAGCCCTCAGGTCAAAAATTAGGGGCGAGTTCCTCTCCTTGATCACGAGAAACCGAGGCTTTAGCTCCCCGCAGCCCCACACGCATGCAAGGCATCGCCCGTACCATTCGCCGTCAGCGGTTCTCAGTAACAGTTAAATGCGCATTATATCTGCGACACTTGTGGGAGCTTTAAATACATGCACCCCTACAGCACAGGAAAGTAGTGTGCAATTCGTTACCATCCCAAATCATCAACCCCTACTTGAAGCAAAAAAGCTTGCAAAGCTCCCACTGGATTTAAGAAATCGTGAAGTTCCGAATCTTCTGCGCAACCTCAGAAAACGACCATCATCCTTTTCGTTTATTCTCCGTGCTCCATCGCATTTTCGACTAACGCTTAAGGTGTCAAGACATTACCTGT

Protein

Uniprot

Uniprot term	Description
A7RX34	THO complex subunit 7 homolog OS=Nematostella vectensis OX=45351 GN=thoc7 PE=3 SV=1
Q6P643	THO complex subunit 7 homolog OS=Xenopus tropicalis OX=8364 GN=thoc7 PE=2 SV=1
Q7SZ78	THO complex subunit 7 homolog OS=Xenopus laevis OX=8355 GN=thoc7 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05615	THOC7	Tho complex subunit 7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008501	Family	THO complex subunit 7/Mft1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23405	MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000445	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13176	THOC7; THO complex subunit 7	-	Spliceosome	ko03041	deepkoala