Gene detail

Detailed information of acyt_s0124.g3.t2 in Acropora cytherea

Genomic Location: sc0000124_pilon:21056...27635
NR annotation: XP_029205156.2, endoplasmin-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

acyt_s0124.g3.t2

ATGAAGAAAACGTCGTTTCTCCTGAGCCTGTTAGGCCTTCTTGTATTCTCAGCTGTGTGCATAGCTGAAGATGACAAAGCAGAAAAAACTGAAGCTGAGATGCCTAAAGTGGATGAAGATGCTGGAAAAAGCAGAGATGGATCTAAGACTGATGATGAAGCAGTTGAAAGAGAGGAGGAAGCCATCAGGCTTGATGGCTTGAATGTTGCACAGATGAAGGAAATTAGAGACAAGGCTGAAAAATTTGCATTCCAGGCTGAAGTTAGTCGGATGATGAAGTTGATCATCAACTCTTTGTACAGAAATAAAGAGATTTTCTTGAGGGAACTTATTTCAAATTCTTCTGATGCCTTGGACAAGATAAGATTCTTGAGTCTTACTGACAAGACAGCCCTTGCTGCTACAGAGGAACTGTCAATTAGAATCAAAGCTGACAAAGAAAACAATGTCCTTCATGTAACAGACACTGGTATTGGTATGACAAAAGATGACTTGGTCAAAAACCTTGGCACTATAGCTAAGTCTGGAACTAGCGAATTCTTCCAGAAGATGTCTGAGGCATCATCAGATCAAGCCAGTGATCTTATTGGCCAGTTTGGTGTTGGTTTCTACTCTTCATTCCTTGTTGCTGACCGTGTAATAGTAACAACCAAGCATAATGATGACAAGCAATACATCTGGGAATCAGATTCTGTCTCTTTCAGTATCACAGAGGATCCCAGGGGAGATACTCTTCAGAGGGGGACAACAGTCAGTGTCCACTTAAAGGAGGAAGCAAGGGACTTCTTGGAACCTGAAACAATCAAGGACCTTGTTAAGAAGTACAGCCAGTTCATTAATTTTAACATCTACTTGTGGACCAGCAAGACCGAGGAAGTTGAGGAACCAGTTGAGGAAGATACTGCCGAAGACAAGAAAGATGAGGCAGCTGATGAGGACAagaaagaggaagataaagacgagaagaaagacgaggacaaggagaaggaagacaaagaTGATGAAGCTGAGGTTGAAGAGGAATCTGAGGACAAAGAGAAAAAGCCAAAGACCAAGAAGGTAGAAAAGACAGTTTGGGATTGGGAACTTGTTAACTCCAACAAACCAATCTGGACCAGAAAGCCAAAGGATGTCAAAGATGAAGAATACAATGAATTCTACAAATCATTTAGCAAGGACCATGATGATCCTCTGGCAAATATTCACTTTGTTGCAGAAGGGGAAGTGACATTCAGGTCAATTTTGTATGTACCCAAATCTGCTCCAAACAATATGTTCTCAGAATATGGCAAAAAGATGGACCAGATCAAATTGTATGTGCGACGTGTTTTCATCACTGACAATTTTGAAGATATGATGCCCAAGTATTTGTCTTTTATTCGTGGTGTTGTTGACTCGGATGATCTGCCACTGAATGTAAGCCGTGAGACACTGCAGCAGCATAAACTCTTGAAGGTGATCAAGAAAAAACTGGTTCGCAAGGCATTAGATATGATCAAAAAGATACCCAAGGATGAATACATGGACAAATTCTGGAAAGAATTTAGTACAAGCATAAAGCTTGGTATCATGGAGGATCATTCGAACAGAACCCGCTTGGCAAAACTGTTGCGCTTTTATTCTTCCAACTCTGATAAGGAGATGACAAGCTTGGCGGAATACATTGAAAGAATGAAAGAGAAGCAAGATGCTATATACTTTATGGCTGGAACTAGTCGCAAGGAGGTTGAAAGTTCTCCATTTGTGGAGCGTCTACTGAAGAAGGGATACGAGGTCCTCTTCCTGGTTGAGCCAGTTGATGAATACTGTATCCAGAGTTTACCTGAGTTTGAAGGAAAGAAATTCCAAAATGTAGCCAAGGAAGGGCTTAAGATTGGGGAAGAGTCAGAGGTACAAAAGAAGAAACAAGAAGAACTGGAAAGCACATATGAACCTCTACTGAAATGGTTGAAGGATGATGCTCTAAAAGACTTAATAGAAAAAGCAGCAGTGTCCCAGCGTTTGGATGAATCACCTTGTGCCCTTGTTGCCAGCTCATATGGTTGGTCTGGTAATATGGAAAGGATCATGAGATCACAAGCTTATGCAAAGAGAGATGATCCCAGCAATGAGTATTATGCTAATCAGAAGAAAACTCTTGAGGTGAACCCTAGACATCCATTGGTTAAAGAACTATTGAAGCGAGTGGAGACTGACAAAGAAGACAAAACCGCTAAGGATCTTGCCCGTGTGTTGTTTGAGACTGCAACTTTGAGATCAGGCTTCATGATAAAGGATTCACAAGATTTTGCTGGCCGCATTGAACGTATGCTTCGTCTTAGCATGGGAGTTGACTTGGAAGCTACTGTTGATCCAGACGTTgaagaaccagaggaaaaggaagaggaagagaaagagaaagaaggagaggaagttgaagcagaggcagaggaGACAAGCGAGGGGGCTGCAGCAACAGAAACCACTGAAGAAAGCAAAGAAGATAAGGTTGAGGGAGAATCAAAAGAAGCACCTGCTGAAGCAAAAGACGAACTTTAA

Transcript

acyt_s0124.g3.t2

GGCCGTGGAAGGAGCTGGTTGGTTTCATTGAATTGAAAGCTACTTGTATTTCCTCCTCCTCCTCAGAAGGTTTGCGTGGAACTCTTTCTTCATCTGAGCTTTATCTCTGGTTTTCTAAAAATGAAGAAAACGTCGTTTCTCCTGAGCCTGTTAGGCCTTCTTGTATTCTCAGCTGTGTGCATAGCTGAAGATGACAAAGCAGAAAAAACTGAAGCTGAGATGCCTAAAGTGGATGAAGATGCTGGAAAAAGCAGAGATGGATCTAAGACTGATGATGAAGCAGTTGAAAGAGAGGAGGAAGCCATCAGGCTTGATGGCTTGAATGTTGCACAGATGAAGGAAATTAGAGACAAGGCTGAAAAATTTGCATTCCAGGCTGAAGTTAGTCGGATGATGAAGTTGATCATCAACTCTTTGTACAGAAATAAAGAGATTTTCTTGAGGGAACTTATTTCAAATTCTTCTGATGCCTTGGACAAGATAAGATTCTTGAGTCTTACTGACAAGACAGCCCTTGCTGCTACAGAGGAACTGTCAATTAGAATCAAAGCTGACAAAGAAAACAATGTCCTTCATGTAACAGACACTGGTATTGGTATGACAAAAGATGACTTGGTCAAAAACCTTGGCACTATAGCTAAGTCTGGAACTAGCGAATTCTTCCAGAAGATGTCTGAGGCATCATCAGATCAAGCCAGTGATCTTATTGGCCAGTTTGGTGTTGGTTTCTACTCTTCATTCCTTGTTGCTGACCGTGTAATAGTAACAACCAAGCATAATGATGACAAGCAATACATCTGGGAATCAGATTCTGTCTCTTTCAGTATCACAGAGGATCCCAGGGGAGATACTCTTCAGAGGGGGACAACAGTCAGTGTCCACTTAAAGGAGGAAGCAAGGGACTTCTTGGAACCTGAAACAATCAAGGACCTTGTTAAGAAGTACAGCCAGTTCATTAATTTTAACATCTACTTGTGGACCAGCAAGACCGAGGAAGTTGAGGAACCAGTTGAGGAAGATACTGCCGAAGACAAGAAAGATGAGGCAGCTGATGAGGACAagaaagaggaagataaagacgagaagaaagacgaggacaaggagaaggaagacaaagaTGATGAAGCTGAGGTTGAAGAGGAATCTGAGGACAAAGAGAAAAAGCCAAAGACCAAGAAGGTAGAAAAGACAGTTTGGGATTGGGAACTTGTTAACTCCAACAAACCAATCTGGACCAGAAAGCCAAAGGATGTCAAAGATGAAGAATACAATGAATTCTACAAATCATTTAGCAAGGACCATGATGATCCTCTGGCAAATATTCACTTTGTTGCAGAAGGGGAAGTGACATTCAGGTCAATTTTGTATGTACCCAAATCTGCTCCAAACAATATGTTCTCAGAATATGGCAAAAAGATGGACCAGATCAAATTGTATGTGCGACGTGTTTTCATCACTGACAATTTTGAAGATATGATGCCCAAGTATTTGTCTTTTATTCGTGGTGTTGTTGACTCGGATGATCTGCCACTGAATGTAAGCCGTGAGACACTGCAGCAGCATAAACTCTTGAAGGTGATCAAGAAAAAACTGGTTCGCAAGGCATTAGATATGATCAAAAAGATACCCAAGGATGAATACATGGACAAATTCTGGAAAGAATTTAGTACAAGCATAAAGCTTGGTATCATGGAGGATCATTCGAACAGAACCCGCTTGGCAAAACTGTTGCGCTTTTATTCTTCCAACTCTGATAAGGAGATGACAAGCTTGGCGGAATACATTGAAAGAATGAAAGAGAAGCAAGATGCTATATACTTTATGGCTGGAACTAGTCGCAAGGAGGTTGAAAGTTCTCCATTTGTGGAGCGTCTACTGAAGAAGGGATACGAGGTCCTCTTCCTGGTTGAGCCAGTTGATGAATACTGTATCCAGAGTTTACCTGAGTTTGAAGGAAAGAAATTCCAAAATGTAGCCAAGGAAGGGCTTAAGATTGGGGAAGAGTCAGAGGTACAAAAGAAGAAACAAGAAGAACTGGAAAGCACATATGAACCTCTACTGAAATGGTTGAAGGATGATGCTCTAAAAGACTTAATAGAAAAAGCAGCAGTGTCCCAGCGTTTGGATGAATCACCTTGTGCCCTTGTTGCCAGCTCATATGGTTGGTCTGGTAATATGGAAAGGATCATGAGATCACAAGCTTATGCAAAGAGAGATGATCCCAGCAATGAGTATTATGCTAATCAGAAGAAAACTCTTGAGGTGAACCCTAGACATCCATTGGTTAAAGAACTATTGAAGCGAGTGGAGACTGACAAAGAAGACAAAACCGCTAAGGATCTTGCCCGTGTGTTGTTTGAGACTGCAACTTTGAGATCAGGCTTCATGATAAAGGATTCACAAGATTTTGCTGGCCGCATTGAACGTATGCTTCGTCTTAGCATGGGAGTTGACTTGGAAGCTACTGTTGATCCAGACGTTgaagaaccagaggaaaaggaagaggaagagaaagagaaagaaggagaggaagttgaagcagaggcagaggaGACAAGCGAGGGGGCTGCAGCAACAGAAACCACTGAAGAAAGCAAAGAAGATAAGGTTGAGGGAGAATCAAAAGAAGCACCTGCTGAAGCAAAAGACGAACTTTAACAGCTGAAAACCGTTAGAGACTTTTACATTGCAGTATCTTGAAAAAATGCTGCCTTTCTAGAAGTGGATGCAAAATTAAAGCCACACTGAACAGTGTCCCAAATACTTATTTATAACATCTGAAGGATAAATTTACTTAATGAGTTGTTGAAAAGGATCTCTGTTTTTTGCATCATCCACTTCTCACTTGATATGTTGTATTTCCTCCACTACCAAATCCAATTTTTGAAAACAGTTCTGTACCAGAATGAGTGTCAATAAATTTCGTTTCTACGCAAAATAGTCATTTTAGGCGACGTTAATAAAATTACCTTTATTAC

Protein

Uniprot

Uniprot term	Description
P08110	Endoplasmin OS=Gallus gallus OX=9031 GN=HSP90B1 PE=1 SV=1
P41148	Endoplasmin OS=Canis lupus familiaris OX=9615 GN=HSP90B1 PE=1 SV=1
Q29092	Endoplasmin OS=Sus scrofa OX=9823 GN=HSP90B1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00183	HSP90	Hsp90 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020575	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR037196	Homologous_superfamily	HSP90, C-terminal domain	Interproscan
IPR003594	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001404	Family	Heat shock protein Hsp90 family	Interproscan
IPR019805	Conserved_site	Heat shock protein Hsp90, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09487	HSP90B, TRA1; heat shock protein 90kDa beta	-	Chaperones and folding catalysts	ko03110	deepkoala