Gene detail

Detailed information of acyt_s0134.g17.t1 in Acropora cytherea

Genomic Location: sc0000134_pilon:237206...245015
NR annotation: XP_044184941.1, nuclear protein localization protein 4 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0134.g17.t1

CAAGAAGAAACTGAGAGAATTTAACACTTCCTGAAGGGAACGATATGTCTCGAATTATTGTGCGCCTTCAGTCCCGCGAGGGAACTCGTAGAATCAACTGCTCCCCTCACGAAAGTTTGTCGACTTTTTTTTCTAAGGTTTCAACAGAGTTTTCTCTTCCAAAGAGGGGATGGACTTTATATTTACATAGAGATAAATCTGGTGAAATAAAGAATTCTACCAGAAGGACTCTATCTTCAATTGGTGTTAAGCATGGAGACATGCTCTTTTTGTCTCAGGAAGTATCTGCACATAATGAAGATACCAGAGAGCATAATTCTGTTCCCCTGACTTCCTCTTCTTCATCTGCTCCTGTTTTATCCTCTAACATTGAAGAAGATGAAATTGATGTATTTCTCTCCAAGCAAGAGGGCTTGATTCACAGAGAGCGAGATCCACAATTGTGTCATCATAACCCAAACAGCAAGTGCATTCATTGTTTCCCACTTGAGCCCTATGATGAAGAGTACTTAAAGAATCATACTCCCCCGATCAAACACATGTCATTTCATGCCTTCATTAAGAAGCTTGGAGGAGGCACAGACAGAGGCAAGTTTACGGTACTTGAGGATACAAGTTGTCGAATCAAACCTGGATGTACAGAGCATCCACCATGGCCGGGGGGAATTTGTACAAAGTGTCAACCAAGTGCGATTACACTAAAAAGACAAGCTTACAGACATGTAGATAACATCCTCTTTGAAAATCGATTCATTGTGGAATCATTTTTAAATTACTGGAGGAAGACAGGAAACCAGAGACTAGGATTCTTGTATGGTCGTTATGAACATCACAAAGACGTGCCACTAGGAATAAGAGCTTCCATAGCTGCTATTTATGAACCACCACAGGAGGACACTCCAGACAGTATAAAACTCTTAGAAGATCCAAATGAAGCTCTAGTTGACAAACTAGCTTCAGATCTAGGCCTGAAAAAGGTGGGGTGGATATTTACAGACCTTTTAGCAGACGATGTGCGCAAAGGGACAGTAAAACACTTAAGAGATATCAACACACACTTCCTGACTGCGGAGGAGTGTATATTGGCAGCTGACCTTCAGAATCATTACCCATCACCTTGTAGATTATCTTCGAGTGGTAAATTTGGATCCAAGTTTTCCACTGTTGTGGTGTCAGGTGACATGGACAATCAAGTGGGATTTGATGGTTTTCAAGTGTCCAATCAGTGCATGGCTTTAGTACGCGATGACTGCCTGGTACCAACAGTAGACGAGCCAGGGTTAGGTTACATCCGGGAGTCTTCAAGTAATCAATATGTCCCGGATGTCTTCTATAAGGCTACAGATTCGTATGGGAATGAAGTTACCCAGCTCGCGAGACCGATGCCTATTGAGTATGTGCTAGTTCAGGTACCAACAGCCTTCCCAGTTGATCCTCAGTTTACATTTACCAACCAAAGCCGAGGAGAACCCTTTCCATTAGAAAACCGCTCGAACATTGGAGAAGTGCAGGATTTTAACGCGTTAGTAAACCATTTAAACCAGTTCTCGCCGGATCAGTTTCTCACTGCCATGTCCAATTTCCACCTTCTGGTCTTCCTGGCAACCTGCGATATGCTTCCGTTGAGGGACCACTTAACCGAATTATGCGAAGCGATAAAAACGCAAGACGCCCAGGCGGCGCACCGTTGGAGTAAAGGCGAGCAATGGTCTACAGTTACACAATTTATACAGGCAGCTAATGCTCCTTCACTGGAACCACATGGGGCAGTTGGAGATGTGGATATGGTTGATATCTCTCAGTCTCCTAGCGGCGCAAGCTGGACGTGCAAGCATTGTACATATATTAACGAACATGGACGCGAGAACTGCGATATGTGTAGCTTACCGCAAACTTGAGTCATTCTTCCAATCGCCAAGACTGAAGATTAAGAAATAATGACATTCTTTTTTAGAGGAACTGTATTTAAAAGAAAGGTTTCATGTTCCATGCTTAAAAATTGCTGCCCGTTCAAATTCCTCTCTCTTGATTCCTATATTTGAATCTTAAAATTACACCAAACCTGTTCTGCACGTTTAATAAAACTGCAGCTCAGAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q8TAT6	Nuclear protein localization protein 4 homolog OS=Homo sapiens OX=9606 GN=NPLOC4 PE=1 SV=3
P60670	Nuclear protein localization protein 4 homolog OS=Mus musculus OX=10090 GN=Nploc4 PE=1 SV=3
Q9ES54	Nuclear protein localization protein 4 homolog OS=Rattus norvegicus OX=10116 GN=Nploc4 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05021	NPL4	NPL4 family	Family	Interproscan
PF11543	UN_NPL4	Nuclear pore localisation protein NPL4	Family	Interproscan
PF05020	zf-NPL4	NPL4 family, putative zinc binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR037518	Domain	MPN domain	Interproscan
IPR007717	Domain	Nuclear pore localisation protein NPL4, C-terminal	Interproscan
IPR016563	Family	Nuclear protein localization protein 4	Interproscan
IPR024682	Domain	Nuclear pore localisation protein Npl4, ubiquitin-like domain	Interproscan
IPR007716	Domain	NPL4, zinc-binding putative	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12710	NUCLEAR PROTEIN LOCALIZATION 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14015	NPLOC4, NPL4; nuclear protein localization protein 4	-	Ribosome biogenesis	ko03009	deepkoala