Gene detail

Detailed information of acyt_s0140.g16.t1 in Acropora cytherea

Genomic Location: sc0000140_pilon:389116...407560
NR annotation: XP_029200964.2, NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0140.g16.t1

GTCTACTGCGGAACGTTCAAGACGATAACAGATCTTTCATACCAATAGTAAACGTGCTGTTGCTTTGCGTTTTAGCATTCCAAGATGACGTTACTTGTGGTTAAACTTCTACTTGGTGCTTTTATTGTTGCAGAATTGCAATATGGCGCTTTGGGACGCAAGGGTAAATCGCTCCTTGGATTTGGCGCTCTAATTTTTTGCAAGGGGAGGACGTCAATAAACCCGTTAAGGTACAATGGATATGGATGTTACTGCGGTTTTGGTGGACAAGGGCAGCCTAAGGACGAATTGGACCAGTGTTGCAAAGATCACGATGAGTGCTATGGACGGCTTGACAAGAAATTCACCACTTTCAATATTGCGAACTACTTAACGCTTTACTCCGTAAACGTTTTGAAGTGCAAGTGCACTGCTACCTTGCGTGATGGAAGATTTTTGACGGGTCGAAATTTGCAGAGAATATTTCTTTCCAGACGAGTAAATCAAGATGTTAAACAGGTCCAAAGGAATCAAACATTCAGCTCTTCAACTCGAAGTAGAAATGGGATTATTTCTGCCCTCAATGGACGAACGAGTTTCCCATTTTCACCCACTCCAAGTTTGTTCCTACCACTTCGAGTGAATGCCAGAACAATGTTTATCCAAGTGCAAGAAACACCAAATCCAAACAGTTTGAAGTTTGTTCCTGGCCAGCAGGTGCTGGAATCTGGGAGCATGAATTTTCCATCTGCGCAGTCTGCATACTGTTCCCCTTTAGCCAGGAGTTTATTTAGAATCAGTGGCGTGGAAGGAGTGATGTTTGGGCCAGATTTTATCACTGTCACTAAAACTGATGATGACAATGACTGGTCAATTTTGAAACCAGATATCTTTGCCTCCATAATGGATTTCTTTGCCAGTAATGTCCCAATCCTTACTGAAGACCAACCAGCTAGTGACACAGCAATTGACCCCGATGATGATGAAACAGTTGCCATGATAAAGGAGCTGCTGGAAACCAGAATAAGACCAACGGTTCAAGAAGATGGCGGAGACATCATCTTCCAGGGTTTTCACGATGGTGTAGTGAAGTTAAAACTTCAGGGTGCTTGTTCTACCTGTCCAAGTTCAGTTGTGACTTTAAAAAACGGAATTGAAAACATGATGCAGTTTTACATTCCCGATGTTCTCTCAGTGGAGCAGGTTGAAGATGAAGTGGATGAGATTAATAAGACGGAATTTCAAAAGCTGGAAACAAAACTTGGTGAAAGCAGCGACTAGTAGATTCCGTAGTTCAGAGAGCATCTGATTTTCGCCCTTCAGTGCTGCTGTTTAAGAAGCACGAGTGGTTCAACTGTGCTCTAAAGCAGGTCTTGAACTGTTTAGTGCAAAGGTGTATACTTGAAGTGCTGTTACACAAAGCAATTTCAACTCGTCTTGTAATTTTACTGCTGCAGGCCTTTTGTCGCTCGTACTACGGGTTCGAGGGCGAAAGAACGGGATTGAGTCTCTACAACGTGTACATTTGAAATAGCAAGGACTTGAATTATTTCATTTACTGGCTGTTATAAATCAGTTTTCAGTGGACAGAAAGAATTGTAAAAGACAAAGGAAAGCTGGTGTTGAAGAAAGCCCTTTTTTTACATTCGAAACGAAGAAACAAACCAAGCTTTCTGATAGGTCAATGATTGGACAAAGTGATCACAAATAACCAATCAAATGCAAGGGCAGTCATGGTGAAGGAACGCGCGCATTGCATCTGCATAATTACCATTATTATGATATCATATATTATTGAATTTTCAGGGATGTAAAATTTTATTACATTACTTTTTTTTTTTCGCATGCGGCGTGAAGTAAATAAAAAAGAAAATAAATTAACAAGCCAGTAATTTTTGGTGGTCTTCGTAAACGGTTACTCCAGCGCTAAATAATTATGTGCAAGTAATACTGCAAGGTAAACAGTTATGGTTTAACATAGTTCATGCGGCTAAGTTGCAATAATATGAATGTTTAAGATTACGTAGCTGTATTGCTCGTGTGCAAAGCGGGAAAAGAGGAGATTAATCAACAATTATTATGCGGGTAAAACAAAGAGTTGTTTTATGGAGTATCTTTATGAATGAACTCTCtaccactgtattcgttgacgttttcgttcgcgactttggaaaactaaacacccgcggaaacgtttccaaaataatttccgttagtcttgcgtgttatcgacagatcgggtcgaaatccaccaatcaaagcccgctattatgacgtaaggaaggtctgaaaagcacactaccgatccgatctggcgataacacataagactaacggaaattttagaaacgtttcgcgggcgttttgttttccaaagttgcgtatcaacgaaaacggtggtaATTGAACTTCAACTTTATTTACACTGTAAAGATGAAGTAATCTTACAGACTATATAATTTACTACATATAATATTTGAATATTATTAAATGGAAAGTCTAGAG

Protein

Uniprot

Uniprot term	Description
Q9UMS0	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens OX=9606 GN=NFU1 PE=1 SV=2
B5DKJ8	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA22888 PE=3 SV=1
B4M375	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis OX=7244 GN=GJ19011 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00068	Phospholip_A2_1	Phospholipase A2	Domain	Interproscan
PF01106	NifU	NifU-like domain	Family	Interproscan
PF08712	Nfu_N	Scaffold protein Nfu/NifU N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016090	Domain	Phospholipase A2 domain	Interproscan
IPR001211	Family	Phospholipase A2	Interproscan
IPR034904	Homologous_superfamily	Fe-S cluster assembly domain superfamily	Interproscan
IPR014824	Domain	Scaffold protein Nfu/NifU, N-terminal	Interproscan
IPR036498	Homologous_superfamily	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Interproscan
IPR036444	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR033113	Active_site	Phospholipase A2, histidine active site	Interproscan
IPR001075	Domain	NIF system FeS cluster assembly, NifU, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004623	Molecular Function	phospholipase A2 activity	Interproscan
GO:0006644	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482	Biological Process	arachidonate secretion	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016042	Biological Process	lipid catabolic process	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0097428	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22074	NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala