Gene detail

Detailed information of acyt_s0143.g9.t1 in Acropora cytherea

Genomic Location: sc0000143_pilon:121936...147815
NR annotation: XP_029202273.1, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1-like [Acropora millepora]
Species Acropora cytherea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

acyt_s0143.g9.t1

ATGAGTGCGAAAGAAAATGTTTACGGCCCAGGGCCTGGCAATGCGTCTGGGATTGCTATCGGTGAAGAAATGGGGCCGATCATCACCGCTTTGAAGGAAGGTAGTGCAATGACAAGATACTACTCCAACAGAAAAAGGCAATCGGATGTCAGGATTTTCAAATTGAAAATGGAAGAGTTTCAGCTGGTATGGTGTAGGAAGGAGGGAGCAAGAGAGGAGGACTCAGTTTTTATTCGAGAGATCAAGGAAGTTCGCCGAGGTTTAGGATCCAAAGATTTTGACAGAAATGCGGACGCGGCCCGAAGACGTGATCCAAACCGTTGTCTTGTGATTTTGTATGGCACTGAATTCAAACTAAAGACTTTGAGTCTTGTTGCCCACAGTCATCAAGAGCGAGAGTTCTGGGTGAAGGGTCTTGTGTATTTGATGTACGAAAGTTTGATTGCAACCCAAGCCGTGCTGATACACAGATGGTTGTTACGCGAATGGAATGGTATTGCAGCCCTTGCAAACACAGCAAGGAAAGGCCCCAGCTCTATAGAGATGCCCATTTTGATCGGTATGAGGGAGCTACGGGCATTTTTTCAACGTGTGAATGTTAAACTGAGCAATGCGAAATTGAAGGAGCTTATCCAGATTGCGGGAAGAGGGGATAGCCATGTCAATTTTGAGGGATTTCGCAAAATTTATGATTCAATAATGACTGTTAAAGAATTAGTAGTACAGTTTTCTGATTACATTGAAAATGGTACCTATGTTCCTTTGGTCAACTTTCAAAGGTTCCTTTTGGAGGAGCAAGAGGAACCTGGGGCAAAAGACCTTGAAACTGTACGAAGCTATATGTTGGAATATCTGTCTGATGGTAGTAGAAATTACAGTGAGCCCTATTTCACTGTTTCGGAGTTTTTGGATTACCTGATGTCAAAAGGTAACAGTGCCTTTAATTCAGCACATTGTGAGGTGTATCAAGATATGACCAAACCTCTTACCTTTTACTGGATTGCTTCATCACACAACACGTATCTGACAGGGGATCAGTTCCAGGGTGAATCCTCTGTGGAAGCCTACATCCGTGCCCTCAGAATGGGCTGTCGCTGTTTAGAATTGGACTGCTGGGATGGTCCAGATGGTCTACCCATCATCACGCATGGACATACACTTGTTTCCAGAATCAAATTTGTTGAAGTTGTGCGTGCAATCATGGACAATGCATTTGTTGCATCTGACTACCCATTGATTTTGTCACTGGAGAACCACTGCAGCATTCCTCAACAGAAGGTTATGGCACAGACTTTCCAAGATATTTTTGGAGACTGTCTCCTCTCACAACCAATTGATGGTAATGCAAAAGAAATGCCATCCCCTACTGCTTTGAGGAACAAAATTATACTCAAGCACAAGAAGCTTCCCAAAGATCAAACACAGGCTGCGGAGACCACAGTCGGTGATCCATTGGTAGAGGATGACCTTAGTCAGTCTCTGAAGAATGGATATCTTCTCCTTGAGGATGAAATTGATCATGGCTGGAAACGTCACTTTTTCTGTTTAACAAAAGACAAGTTGTTCTGGACAGAAGAACAGGTGAGGTCTGAAGAAGATGATGATGACGAGGGGCTTGAGGGAGCTGGAGCTGGAGAGTCCAGTAAGGATGAACTTCATTATGGAGAAAGGTGGTTTCATGGCAAGCTTTTAGATGGGCGAAAAGTATCAGAAAATTTGTTAAACCAATTCAACCGTGGAGATGGTTCCTTTCTTGTACGAGAAAGCACTACATTTGTTGGGGACTTCTCGTTGTCATTTTGGAGAAGAGGCAAAGTCCAACACTGTAGGATCAAATCCAAGCAAGAGAATGGCCAGACCAAGTACTATTTGGTTGATCAAGTGACATTTGACAGCCTCTACAGTCTCATTAATTTCTATCAGAGTCACCCACTCAAAAGCATGAACTTTGAACTCACTCTGGCAGATGCTATTCCTCAGCCAAATGCACATCTTGACCAATGTTGGTACCATGATAACCTTAATAGAGACAAAGCAGAAGACATGTTGAAAAGAGTACGGAAAAACGGTGCTTACCTTGTAAGAAGGAAGGAGTCAGAGCAGGCCACAGATGGCTCAGAATCCAATAATAGAGATGTGTTTGATACACAAGATGATAAATCGTCATATGCTATCTCCTTCAGGGCTGAAGGCAAAATCAAGCACTGCAGGATAAAACGTGAAGGTAGACTCTTCACAATTGGCACTGCTCAGTTTGAGAGTCTTGTGGAATTGGTTGAGTTTTACAGGAAACACCCATTGTACAAAGGAATGAAACTGAGATATCCAATCAATGAGAGTTGCCCTGAAGAGGATGCCATCTATGGTACAGGGGATCATTATCATGAACCAAATCAGTTTATCACCAAGCCGGCATGTCGAGCCTTGTGGGACTATGAAGCTCAAAATCCAGATGAGATGTCATTTTGCAGAGGGGCATTCATCACAAATGTAACAAAAGAGGATGGAGGATGGTGGCTTGGTGATTATGGAGGCCAGAGGCAAAAATTCTTCCCAGCTAATTACTGTGAGGAGATCAACTATGTTGCTGAAGAGGAAGCCAAAAACAATAAATATGAAAATGGTGTTGATGAAGAGTCTGAAGCACCTACTCAAGAGATGTCTCCATTGGGTGATCTTCAAAAGGGAAGCATTGACCTTCAAGGATGTATAGTTGAGACAGGACCACCAAAAGCAGGGCAGAGGTACATCTTTAGAATATCTAGACGTGAAATTTTGCTGGAGGCATCTGCTGAGTCACAAGAGGACTTAAATGATTGGTTGCAAGTTCTGCGGCAGATGGCAGATGAAAGAGAAGCTGTGGTTCAAAAAATGGTGCGGCAGGCTAATCTGAGTCAAGAACTGTCTGATTTAGTTGTGTACTGTCAACCAGTGCCATTTGATCTTGACAATGTTTCTGGCAAACACCATGAGATGTCATCATTCCCAGAAACAAGGCTGGAGAGGTTTATTAGCAAGAGAAACAGCAAGGAATTCATGAAATATCCTTTTTATTGTTGA

Transcript

acyt_s0143.g9.t1

AAGATGCCAGCAAGAACCGCAATTAAAGTTCTCTGAAGTCTCTTGAATTTAAGAATTCGATGGAAAACACTCATCTGGCCTGAAAATGAGTGCGAAAGAAAATGTTTACGGCCCAGGGCCTGGCAATGCGTCTGGGATTGCTATCGGTGAAGAAATGGGGCCGATCATCACCGCTTTGAAGGAAGGTAGTGCAATGACAAGATACTACTCCAACAGAAAAAGGCAATCGGATGTCAGGATTTTCAAATTGAAAATGGAAGAGTTTCAGCTGGTATGGTGTAGGAAGGAGGGAGCAAGAGAGGAGGACTCAGTTTTTATTCGAGAGATCAAGGAAGTTCGCCGAGGTTTAGGATCCAAAGATTTTGACAGAAATGCGGACGCGGCCCGAAGACGTGATCCAAACCGTTGTCTTGTGATTTTGTATGGCACTGAATTCAAACTAAAGACTTTGAGTCTTGTTGCCCACAGTCATCAAGAGCGAGAGTTCTGGGTGAAGGGTCTTGTGTATTTGATGTACGAAAGTTTGATTGCAACCCAAGCCGTGCTGATACACAGATGGTTGTTACGCGAATGGAATGGTATTGCAGCCCTTGCAAACACAGCAAGGAAAGGCCCCAGCTCTATAGAGATGCCCATTTTGATCGGTATGAGGGAGCTACGGGCATTTTTTCAACGTGTGAATGTTAAACTGAGCAATGCGAAATTGAAGGAGCTTATCCAGATTGCGGGAAGAGGGGATAGCCATGTCAATTTTGAGGGATTTCGCAAAATTTATGATTCAATAATGACTGTTAAAGAATTAGTAGTACAGTTTTCTGATTACATTGAAAATGGTACCTATGTTCCTTTGGTCAACTTTCAAAGGTTCCTTTTGGAGGAGCAAGAGGAACCTGGGGCAAAAGACCTTGAAACTGTACGAAGCTATATGTTGGAATATCTGTCTGATGGTAGTAGAAATTACAGTGAGCCCTATTTCACTGTTTCGGAGTTTTTGGATTACCTGATGTCAAAAGGTAACAGTGCCTTTAATTCAGCACATTGTGAGGTGTATCAAGATATGACCAAACCTCTTACCTTTTACTGGATTGCTTCATCACACAACACGTATCTGACAGGGGATCAGTTCCAGGGTGAATCCTCTGTGGAAGCCTACATCCGTGCCCTCAGAATGGGCTGTCGCTGTTTAGAATTGGACTGCTGGGATGGTCCAGATGGTCTACCCATCATCACGCATGGACATACACTTGTTTCCAGAATCAAATTTGTTGAAGTTGTGCGTGCAATCATGGACAATGCATTTGTTGCATCTGACTACCCATTGATTTTGTCACTGGAGAACCACTGCAGCATTCCTCAACAGAAGGTTATGGCACAGACTTTCCAAGATATTTTTGGAGACTGTCTCCTCTCACAACCAATTGATGGTAATGCAAAAGAAATGCCATCCCCTACTGCTTTGAGGAACAAAATTATACTCAAGCACAAGAAGCTTCCCAAAGATCAAACACAGGCTGCGGAGACCACAGTCGGTGATCCATTGGTAGAGGATGACCTTAGTCAGTCTCTGAAGAATGGATATCTTCTCCTTGAGGATGAAATTGATCATGGCTGGAAACGTCACTTTTTCTGTTTAACAAAAGACAAGTTGTTCTGGACAGAAGAACAGGTGAGGTCTGAAGAAGATGATGATGACGAGGGGCTTGAGGGAGCTGGAGCTGGAGAGTCCAGTAAGGATGAACTTCATTATGGAGAAAGGTGGTTTCATGGCAAGCTTTTAGATGGGCGAAAAGTATCAGAAAATTTGTTAAACCAATTCAACCGTGGAGATGGTTCCTTTCTTGTACGAGAAAGCACTACATTTGTTGGGGACTTCTCGTTGTCATTTTGGAGAAGAGGCAAAGTCCAACACTGTAGGATCAAATCCAAGCAAGAGAATGGCCAGACCAAGTACTATTTGGTTGATCAAGTGACATTTGACAGCCTCTACAGTCTCATTAATTTCTATCAGAGTCACCCACTCAAAAGCATGAACTTTGAACTCACTCTGGCAGATGCTATTCCTCAGCCAAATGCACATCTTGACCAATGTTGGTACCATGATAACCTTAATAGAGACAAAGCAGAAGACATGTTGAAAAGAGTACGGAAAAACGGTGCTTACCTTGTAAGAAGGAAGGAGTCAGAGCAGGCCACAGATGGCTCAGAATCCAATAATAGAGATGTGTTTGATACACAAGATGATAAATCGTCATATGCTATCTCCTTCAGGGCTGAAGGCAAAATCAAGCACTGCAGGATAAAACGTGAAGGTAGACTCTTCACAATTGGCACTGCTCAGTTTGAGAGTCTTGTGGAATTGGTTGAGTTTTACAGGAAACACCCATTGTACAAAGGAATGAAACTGAGATATCCAATCAATGAGAGTTGCCCTGAAGAGGATGCCATCTATGGTACAGGGGATCATTATCATGAACCAAATCAGTTTATCACCAAGCCGGCATGTCGAGCCTTGTGGGACTATGAAGCTCAAAATCCAGATGAGATGTCATTTTGCAGAGGGGCATTCATCACAAATGTAACAAAAGAGGATGGAGGATGGTGGCTTGGTGATTATGGAGGCCAGAGGCAAAAATTCTTCCCAGCTAATTACTGTGAGGAGATCAACTATGTTGCTGAAGAGGAAGCCAAAAACAATAAATATGAAAATGGTGTTGATGAAGAGTCTGAAGCACCTACTCAAGAGATGTCTCCATTGGGTGATCTTCAAAAGGGAAGCATTGACCTTCAAGGATGTATAGTTGAGACAGGACCACCAAAAGCAGGGCAGAGGTACATCTTTAGAATATCTAGACGTGAAATTTTGCTGGAGGCATCTGCTGAGTCACAAGAGGACTTAAATGATTGGTTGCAAGTTCTGCGGCAGATGGCAGATGAAAGAGAAGCTGTGGTTCAAAAAATGGTGCGGCAGGCTAATCTGAGTCAAGAACTGTCTGATTTAGTTGTGTACTGTCAACCAGTGCCATTTGATCTTGACAATGTTTCTGGCAAACACCATGAGATGTCATCATTCCCAGAAACAAGGCTGGAGAGGTTTATTAGCAAGAGAAACAGCAAGGAATTCATGAAATATCCTTTTTATTGTTGATGTCTTTTTAACAAGACGTTTTTCATTTGGTATGCATGGTCTTTTTTACAGTTTTAAATCCTTTTTGCTATGGTCATGTCTGTATATTAAGTTCTGTTTTATAAtacagtaccgtgcaaatg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08487	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Bos taurus OX=9913 GN=PLCG1 PE=1 SV=1
P10686	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Rattus norvegicus OX=10116 GN=Plcg1 PE=1 SV=1
P19174	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens OX=9606 GN=PLCG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002564 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR001192 all species →	Family	Phosphoinositide phospholipase C family	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035024 all species →	Domain	PLC-gamma, N-terminal SH2 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR035023 all species →	Domain	PLC-gamma, C-terminal SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001711 all species →	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336 all species →	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004435 all species →	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0010634 all species →	Biological Process	positive regulation of epithelial cell migration	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209 all species →	Biological Process	release of sequestered calcium ion into cytosol	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for acyt_s0143.g9.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →