Gene detail

Detailed information of acyt_s0148.g30.t1 in Acropora cytherea

Genomic Location: sc0000148_pilon:400069...416595
NR annotation: XP_029186483.2, nucleoporin SEH1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0148.g30.t1

ATACGGCCTGACGAAAAATCGACGCGTTTCGTTTTCAATTTCAACTTGCATTTTGGTTCAAATTTTATTGAATTATACTTCGCATTCACGGCTTGAAGGCGGTTTCAATCCATTCCTTGTTACAGTTATTGGATCACTGAATGCTGCAAAAACCCAAACGTTGGGGCCGTCATATAGTCTGACCTGTTTTCAAAAACATGTTTGTCGCTCGCGAGATTCATGCAGAACACAAAGATTTGATTCATGATGTGTCGTATGATTATCATGGCAGGCGAATGGCTACTTGTTCCAGTGATCAGAGTGTGAAGGTTTGGGATCTTGACGAAAATGGTCAGTGGATCTGTACAGCAAGCTGGAAGACTCATTCTGGGTCAGTATGGAAAGTTACTTGGGCACACCCTGAGTTTGGACAGGTTCTGGCATCTTGTTCGTTTGACCGAACTGCTGCAGTATGGGAGGAGCAAGTGGTAGGCACTGGAGATGGTATTTTGCATGGGCAGAGCCATTGGGTGAAAAGAACTTCATTGGTTGACAGTAGGACTTCAGTAACTGATGTTAAATTTGCTCCAAAGCATTTAGGGTTACAACTGGCAACCTGCTCAAAGGATGGCACAGTTAGAATATATGAAGCTCCAGACATAATGAATCTTAGTCAGTGGCATCTTCAGAATGAAATTCAGCACAAATTAAGTTGTAGCTGTGTGTCTTGGAATCCATCCAGGGTCCATGCACCAATGCTGGCTGTTGGAAGTGATGATCGCAACACTAATGCTGGCGGAAAAGTGCAAATTCATGAATACAATGAAGCAAGCAGGAAGTGGCACAGAGTGGAGACTCTTATGGCAATTACAGATGCTGTCAATGATGTTGCATTTGCTCCAAACCTTGGAAGATCATACCATCTGCTTGCTATTGCTTCAAAAGATGTTCGAATCATGATGCTGAAACCATATGGAGATCAAGGCACTAGTGCAGGGGGAAACTTGGCAAAGCTGGATATCAGCTTAGCAGCCCGTTTCAGTGACCATGAATCACAGGTATGGCGAGTTGAATGGAATGTAACTGGTACTATTCTTGCCTCCTCTGGCGATGATGGTCGTGTGAGATTGTGGAAAGCCAATTATCTTGACAACTGGAAAAGCATTGCAGTTTTACGAGGAGATGGCGTACCAGGTTTCACAGGTGGACCTAGCAGTGTCACTGACAAAGATCCTAAGGAAGCAGGAATGCCATCAGTCATCCATCAAAGAATGTGGTACTCATGATCTTCCTTGGATCATCTCAGAATCCACAGAATCATTAAGAGCTGACAGAGTTCAAGAATATTTTTGCTTCACTTTTTATCAGTTTTCAATTTTTTTTCTTTTTCTATTGTAAAGACACTGGTCGCAGATATGTTTTGCAACACAAGAATGCATTAATTCTTTTTTGGATTGTTTTTGTTATCCCAAGCGGCAGGCACTAGCTTTCCTATGCCCTACGGTCGGCTCAGGTAATCCAAAAAATTGAGAGAGATTTCCAAAAAATAATGAAATGAGGTACAAGACCTTTCTAGTAAGAATTGCAAAGTCTCCACTTTTTGCTCTTAAATAAAGGCATTAGGGAGCttaaccctttacctcccaaggggttccccattgacgagtaaaatcgtctggcgttagacagagtaaaatctataagtgccaattggcactcatgggagggaaagggttaataaggataaataattaatCAAGACAAGGACGTCATTTGAAAATCTACATTTCTGCAATCAGTTCTCAACCATTTGACAAACCAAACAACTTGGAATAATAATTAtattccaagtttattggtgtgtcaaatggtttctgatcatcatggaaataggtatgagtggtttggagatgaaaagaacaaaatgaaaatttgttgctgagggcacgctgcttcatccaccaaagaaaaacaggtcactgcatgttgtagattgaacaagaacagctggttaatgtgccaaaataaaaaaaacgcttgtgcaaaaatacctgttttttttttttttgCATTATGTGCAttttgaaggcagtatgatgtgaaaacttgtagccaagagcaaacttaaaaatgtggatatgactcaaatcgtttaacttaaggatggattttttggcatagagatatgtatgtaatttacagtgttagagaatttcattatttaaaaggaacaaaaatagaagtaaagccaaaaatttgcattgttctccgggttttccccagcaaatcatgatgatcaacaatgctggtcatcatgatgtttcagtggtgtgccaagctcaagcctaccaaattgttggtcaacaaAAAAGTGGGCCTCTGTAGCCTGTAGGGATTGCACCCCCCTCCCTACCAGACtgccatttatgtcgtttttcagccccgcaggttttacaatgtcccacaagtattaatcacagatgcctagcacctgatcatttcaagctttggccaccattttggactgactgacacaagtggacaagataaattttaatatcgtgaatttcaaaagtgcaaggtcatgaccatgtcaaactttagtctagagtgatataccgccgaccaaaactcgttcaaatcctgcggGCTAACATTTAACCCATCAACAAACATGTAAGGTGTGATTTGAGACAAGTCAACCAATTAGTAGCCTTCCAAGCTGTGGTTTTAAGAAGACTAAAGCAGGCATTTTTGAGGAGGGGGTAAACTAAGAGTCCCCTAAAAACAACCGCCTGGGAGGCTGGCAAATCAGCTTTGTAAATATTTTTAGAATATGCAGTTGTGACAAAGGTTCTGAGACAAACACACACAGTAAAATGAACTCCAATATTACTACCTCCTCGCCCATGAATCTCACCTGCAGAACAGGCCTAAAAAATTTTAGCAAATGGGCTTGAAGTGTCTTGGCTACCATGTTAATCTTCATCTCTTTTGGCTGATGGAAACATAAAACAACATGGCAGCTAAAGTACGATAAGTTGGTTTGCTAAAATATGCTGTATTGAAGCTGCATGCTTTATGTTCTGAAACCTCTCCAATAACCAATCCTTAAAATAATTATTACAAGAATCACTCCTTCCAGTAGTCTGGGATTTCTCATGTTATTTGAAGTCAAACGTTTGTGGCAGAACAAGAGAACACAAAAAATTTAAAGTGAACGAAAAGACAGCAATACTAACATCTTACCAAACCATCCCAGATTACCTTTTTATTAAATTTTAACCCAACACAAGATGTGATGAATGTTTGCATCTAACTACTCACTTACTTTTTCTATGTTAAAAATTATACACACAAGAAATGTTACCGTTATTTGAATATAAAGAAACATTGCTAGAGAGAGAAGCACTGCATGGCAATGTAACAGGAGCAGCAGCTGTAATAATAAATCTGGATAAAAGTCTAGCTGATGTGTTAAAATCTAAGATACATGCATTTCAAATGATCAAAACTAGAATTACTTTACTTTCCCCTCTCCCCCCAAAACAATGTTGAATTAATGTAACTTGATCCCTTCTGTTCCCCAAAGACCAACATTGGCCAGGGTGGGGTGGGGGTGAACCTCATCACATGCATATTGTCTTGTTATGAGTAAAATGCCTTGTAAAAGGTAAAATTCTCAATTTGTCCAAGATCACGGGTTAACCACAGCATGCTCTAGCTAATTATAATATAAAATTTCATTATCGCCTTGGCAGACTGACTGACACAAAGGACTTGACATAAAAAAAAAACGACTTTTTG

Protein

Uniprot

Gene family

Uniprot term	Description
Q4FZW5	Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=1 SV=1
Q5U4Y8	Nucleoporin SEH1 OS=Xenopus tropicalis OX=8364 GN=seh1l PE=2 SV=1
A7YY75	Nucleoporin SEH1 OS=Bos taurus OX=9913 GN=SEH1L PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037363	Family	Sec13/Seh1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035859	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14299	SEH1; nucleoporin SEH1	-	Membrane trafficking	ko04131	deepkoala