Gene detail

Detailed information of acyt_s0149.g55.t1 in Acropora cytherea

Genomic Location: sc0000149_pilon:470936...479200
NR annotation: XP_029194207.2, microprocessor complex subunit DGCR8-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

acyt_s0149.g55.t1

ACCAAGTGGAATCTCAACGAAAATGGCGGCCGCTCAGAACGCGGCGACTGCATGGAAGGATGGAGCCTCCTGTGAAATGGAAAAGGTGATGCTACCCTCGTGCACTCCCGATTCGACGACGGTGGAATTCTTGGAGCGGTGTCCATTTGGCGAGACGACGATGCCTCAACCCCAAGGAAGAGCACCTATGAAACGAAAATCTTATGACGACTTGCGGAACGGCGGTGAAAAATGCCTAAAGAAAGTCGAGGAGAACACGCAAGAGGAACGCAGGGTGATCATCATGAAAGGCAACCTTCCTCAGCTGGCTCTTCCCGATGGATGGATTGCATTAAACCATCGCAGTGGTGGAATTATTTATCTCCACAAAACATCCCGAGTTTGCACATGGTCTCGCCCTTATCATATTGGAATTGGAAGTGTTAGGAAGCATGATGTACCTTTAGCTGCTATTCCATGCCTTCATCAGAAAACAGGATTAGTTAGAAAACACAAGAACAAAGAACAACCTGTTGCATCCAAAGGCAGTGATTCTAACACCATATTGTCAATGCAAGGGGCATCTGTTTTAAATGTTTTGAATATGAGTGATATTCAGCCCAGTCAAGAAACTCAAAAACACTATGTTTCAGAAGAGGAAAGTGAAAGAACTGGACTTGATGTGGTGCTGAATGTTGCTGATGCCTCTAATGAAACCAATCTAACTAAAGAAACAACAAAAGACAGTGAAAACATGGTGAATGGAGACACAGACAGCAGTATGTTGAGTAATGATAGCACTTGTGTAGCACAAGACAGTCAGGATGCGAGGGATGTAAATTCTACTCCAGAGAAAGATCATTCAGAAAATGAAATTTCAAAAGAACTAGAAAAACCCACAAGAGAACAAAGTGGATCAAGCCAGTCACCTTTTTTTGAAGTGATTGATTCTAAAGAACTTGGCATTTACTTGTCAAATATATGGGAATTTCAATCTCTAACCCATGATCAAGAAAAGAATGCTGTGGTCTTTGAACAACCAGTTTTAGATGGCCTTGAACTGCCAGCTTCATTAGAGTGTCAGCCATTTGCACTTAAAAGTGGTGATAATGCAAAACAATTATTACGAAAAGACCTTTTGCTAAATGCTGGGAAGAAAACACCTGTGGCAATATTGCATGAATACTGTCAGCGAGCTCTGAAAACAAAACCAGTCTATCAGAGTAGCGAGTGTGAGAATGCTGATACACCATTTGCATCTGAGGTTCAAATTGATGGAATTATATATGGCACTGGAAAAGGATCCAATAAAAAATTAGCAAAACAGATTGCAGCTAAATCTGCTCTGGAGGTTTTGTTACCAGAAATGTTTAAGAAAGTGCTGGATTATCAGATCTCAGAGGCAGAATTAGAGTTCTTTGACAAAGTTAACATTGTAGACCCACGCCTCGCTGAATTCTGTTCCAAAACAACGCAACCACTTCCCTCACAAATCCTTGAAGAGTGTTTAAGAAGAAACCAAGGCATTTGCTCCACTCCAATTCAGTTCACAACACAATGCGGACCAGATAGGAAGCTTTCATTTAAAATAACGTGTGGCAAACATGAAGCAACGGGTCCCTGTAAAAATAAACGGACTGGTAAACAACTGGCATCACAACAAATACTGAAGAAACTTCACCCACATTTAGAAAAATGGGGTGCACTGATTCGTATCTACTGTGATAGACCAACAGGTACAATTAAAAAGTACAAGGTTGATGAGAGTGAATACATTAGTGAACAAGAAGCGCGGCGTGGTACCTCGCAGATTAACTACAATTTACTGGAACGCCTCAAAGATGAAATGAGAAAGATACACTTGGAGTCCAAGAAGGAAAAAAAGAACGACAGCCAGAGATCACCTGAGCCTGTCTTTACTGTGGATATATAACTGAAGTTCAGACATCTCATAATTAATATCAAACGTAATTAGCCTCATCTAGAGATTTAATTTTGTGTATGCAAAGCAGTTTTCTGAATAGTGGAATAGGTTTGAATTACAATGCCAAGTGATTCCACAATCAGCCTTGAACTTTTTAAAGTAAAACCAATTATTGCAAAGTGGTTAGGTTCAATTTCCCGCGCTCAAGTAAAATATGCCTCATTTTATTGACAGATATGCGTCTGTCGCCTTTGGTTGAAGTCATATCTGTGTGCTTTGCGGCACTAAATCGAAAATCTCTCGATAAAAAACGATGAGTCAATCATAATTATTGCTATTTATCATGATTAAAAATCAGTGGTCTGTCATAATGAATACTTTTTACCAGCAAAATGTTAGTCCAAAAAATTAACAATAAATGTTGAAGTCTATG

Protein

Uniprot

Uniprot term	Description
Q9EQM6	Microprocessor complex subunit DGCR8 OS=Mus musculus OX=10090 GN=Dgcr8 PE=1 SV=2
Q8WYQ5	Microprocessor complex subunit DGCR8 OS=Homo sapiens OX=9606 GN=DGCR8 PE=1 SV=1
A6QR44	Microprocessor complex subunit DGCR8 OS=Bos taurus OX=9913 GN=DGCR8 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR040375	Family	Microprocessor complex subunit DGCR8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0070877	Cellular Component	microprocessor complex	Interproscan
GO:0070878	Molecular Function	primary miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18419	DCGR8; microprocessor complex subunit DGCR8	-	Chromosome and associated proteins	ko03036	deepkoala