Gene detail

Detailed information of acyt_s0155.g4.t1 in Acropora cytherea

Genomic Location: sc0000155_pilon:105077...129465
NR annotation: XP_044173044.1, uncharacterized protein LOC114961777 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

acyt_s0155.g4.t1

ATGCCTGCTTCATATTTTTTTGTAAAGGGTCAAAAAGCCGAGTTGCGTTGTTCAGCATTAGGTTTGCCAACTCCGAATGTAATGTGGACAAGATTAGGTGTTCAACTGATAGAGGGCCACCGCTTCGCGGTTCTGAGTCTCAATAATGTAACGAAAGCTGATCAGGGTATCTACAGATGTACAGCCAATAACTCACAAGGTCAGAAGAGTGCTACAATGAACCTAACTGTTGTGGcttgcccagactactgcgtatgttcctcagtgtcacgcgaatcaccagtggagtgccgacgagcaaacctcacctatatacctccaggaaccctaaggggttttgcaagcctGGATCTCTCAGAAAATTACATCGAGAATATAACTGCATCGGACTTCAGATCTTTTTTGTATCTTTACGATCTAGTTCTCTCCAAAAACAAGCTAACAAATTTAACAAAGGAGTCGTTCCACAACATAAAGACATTGAAGTTCCTATTTTTGAATGGCAATTCGATCAAGTCCCTGGATTCATATACTTTTAGCAGCCTCTCGTCGTTGGAAATCTTAAATTTAGCAGATAACCCTCTTCAAGAACTGAACGATCACGCTTTTTACATTGCGAACTCGTCCCTTCACACAATGAGGAGAAAAAGCACCGACAACAGCGGAAAACGCCTGATGATTGATATTCTCTTAGCCAGGTTGAAAATTGTTATTGGCTTCTATCAGGTGACATCTGGGATAATCGAAGGGTTTGCTTATGTTGAATGGCCGTCGTCCTTAGCTGTTATTGGTGATTATACAGAATTGATTCAGCTGAACATCTTGTCATTTGTGCCACTTCATTGTCTCTTCCCCTCATGGAAGCAAAACGCCATCAGCAAGATGTACTTTATGTTGGGAAGCAATGTGAGTGTGATTTTATTAGCGGTCATCAGTTTCTGGATAAGAAAACTCTTTATTTTGAGGAACATTAACAAGGAACAGTCTTCCAAAAGGAGAATTGAGTTATCCACAACCAAGGAGTTCCTGTACCGCAACGTGTTTTTATTTCTGTTTATTACCTATCCAAGCACTTGTTCTGCTATTCTAAGGATCTTACCATTGGCTTGTCACGAGCTTTGTACCGAGATTTTATGCACACAGTATCTTAAGTCCGATTATAGCATTAAGTGCGAAGGTGATGGGTACAATTTTGTCAAAATCTTCGCTTTTGCTGCTTCGTCATATATCGTGGTGCTTCCTGGGATAGTGTTTTTGGCCTTATGGCGTCGCAGAAGGCAGCAGCTCTCGCTCAAGCGCAAGCTTAAGCTTCGCAATGTGAAACAAAAGGAAGAAAACATCCCTGCTGATCTCGGGTTTGGGAAGCATGGCGATACTGAAGCAGGTGAAGAAAATAACGAAGATACCTGCGATGACGACAAAGGAGATGACGATAATGCAAGAAATGatcaccccaacagtgaatctgagctcttatcaggaatgagttttctttacgagaactacaatgaagatgcatggtactgggaactggtagaagtcataaggaagctgttgttgacatgcgggatcatcctgattggtcgagagagcaggacgtatgttggtctggcttctatttgctctggattattcgctattgcgtttgccttccgtaaaccaatcagagataagtttgaagacaagctacagctgacgtcactgcttgtgatatttcttaacctcggtattggagtaatactgaagattcccaaagaatcagtgccatctgatgtggatcaatatgttgacacgctgttggtgaatattcttgtcgttggggcaaatgtcttggtcattcttcttgttgttgGTCGTTACCTTGCTGTGTTAATTCGCAATATCGTATTATGGCGACAAAATCCCCAGTGTTCTGCTTCCTGTTGTATCACGATATTTCTTTCGTTGGGCGAACTAAGCAGCGGAGTCAACTCAGTGGCTGGCGGCGTGCGCAAAACAAACCTCCGTGTAAACTTGGGCATTGGAGGTGTAGATATGCCTTCGATGCGCGCAGCTGTTAATGACAATGTTGGTTTTGAAATAGAAGAAACTGATGATGACAACGCGGAGAAAGATAAAAAAGAGCGTGAGGCCCAAAAAAGGCACGTCATTTTCAAGTACAAGAACAAAAAGAGCACCCAAGAGTTGGAGATGAACGGCAGATGA

Transcript

acyt_s0155.g4.t1

CGACTTTTGAATTCACGTCGTTGTTAGTGCCACCTCTGATCGTCGACATGCCTGCTTCATATTTTTTTGTAAAGGGTCAAAAAGCCGAGTTGCGTTGTTCAGCATTAGGTTTGCCAACTCCGAATGTAATGTGGACAAGATTAGGTGTTCAACTGATAGAGGGCCACCGCTTCGCGGTTCTGAGTCTCAATAATGTAACGAAAGCTGATCAGGGTATCTACAGATGTACAGCCAATAACTCACAAGGTCAGAAGAGTGCTACAATGAACCTAACTGTTGTGGcttgcccagactactgcgtatgttcctcagtgtcacgcgaatcaccagtggagtgccgacgagcaaacctcacctatatacctccaggaaccctaaggggttttgcaagcctGGATCTCTCAGAAAATTACATCGAGAATATAACTGCATCGGACTTCAGATCTTTTTTGTATCTTTACGATCTAGTTCTCTCCAAAAACAAGCTAACAAATTTAACAAAGGAGTCGTTCCACAACATAAAGACATTGAAGTTCCTATTTTTGAATGGCAATTCGATCAAGTCCCTGGATTCATATACTTTTAGCAGCCTCTCGTCGTTGGAAATCTTAAATTTAGCAGATAACCCTCTTCAAGAACTGAACGATCACGCTTTTTACATTGCGAACTCGTCCCTTCACACAATGAGGAGAAAAAGCACCGACAACAGCGGAAAACGCCTGATGATTGATATTCTCTTAGCCAGGTTGAAAATTGTTATTGGCTTCTATCAGGTGACATCTGGGATAATCGAAGGGTTTGCTTATGTTGAATGGCCGTCGTCCTTAGCTGTTATTGGTGATTATACAGAATTGATTCAGCTGAACATCTTGTCATTTGTGCCACTTCATTGTCTCTTCCCCTCATGGAAGCAAAACGCCATCAGCAAGATGTACTTTATGTTGGGAAGCAATGTGAGTGTGATTTTATTAGCGGTCATCAGTTTCTGGATAAGAAAACTCTTTATTTTGAGGAACATTAACAAGGAACAGTCTTCCAAAAGGAGAATTGAGTTATCCACAACCAAGGAGTTCCTGTACCGCAACGTGTTTTTATTTCTGTTTATTACCTATCCAAGCACTTGTTCTGCTATTCTAAGGATCTTACCATTGGCTTGTCACGAGCTTTGTACCGAGATTTTATGCACACAGTATCTTAAGTCCGATTATAGCATTAAGTGCGAAGGTGATGGGTACAATTTTGTCAAAATCTTCGCTTTTGCTGCTTCGTCATATATCGTGGTGCTTCCTGGGATAGTGTTTTTGGCCTTATGGCGTCGCAGAAGGCAGCAGCTCTCGCTCAAGCGCAAGCTTAAGCTTCGCAATGTGAAACAAAAGGAAGAAAACATCCCTGCTGATCTCGGGTTTGGGAAGCATGGCGATACTGAAGCAGGTGAAGAAAATAACGAAGATACCTGCGATGACGACAAAGGAGATGACGATAATGCAAGAAATGatcaccccaacagtgaatctgagctcttatcaggaatgagttttctttacgagaactacaatgaagatgcatggtactgggaactggtagaagtcataaggaagctgttgttgacatgcgggatcatcctgattggtcgagagagcaggacgtatgttggtctggcttctatttgctctggattattcgctattgcgtttgccttccgtaaaccaatcagagataagtttgaagacaagctacagctgacgtcactgcttgtgatatttcttaacctcggtattggagtaatactgaagattcccaaagaatcagtgccatctgatgtggatcaatatgttgacacgctgttggtgaatattcttgtcgttggggcaaatgtcttggtcattcttcttgttgttgGTCGTTACCTTGCTGTGTTAATTCGCAATATCGTATTATGGCGACAAAATCCCCAGTGTTCTGCTTCCTGTTGTATCACGATATTTCTTTCGTTGGGCGAACTAAGCAGCGGAGTCAACTCAGTGGCTGGCGGCGTGCGCAAAACAAACCTCCGTGTAAACTTGGGCATTGGAGGTGTAGATATGCCTTCGATGCGCGCAGCTGTTAATGACAATGTTGGTTTTGAAATAGAAGAAACTGATGATGACAACGCGGAGAAAGATAAAAAAGAGCGTGAGGCCCAAAAAAGGCACGTCATTTTCAAGTACAAGAACAAAAAGAGCACCCAAGAGTTGGAGATGAACGGCAGATGAATAAGAATACCAGTTTAAGACAATGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050467	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan