Gene detail

Detailed information of acyt_s0216.g39.t2 in Acropora cytherea

Genomic Location: sc0000216_pilon:551049...571273
NR annotation: XP_044176439.1, inner nuclear membrane protein Man1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

acyt_s0216.g39.t2

ATGGCGGCCAAAGAGAGTGCTATTTCTGATGGAGAATTGCGCCGAAAACTCACAGCGTTAGGCGAAGATGTTGGACCCATAACTCCCACGACTAAGTCTTTTCTAATGCGAAAATTAAAACGCTTACAGAATGAAGCAAAAACCGGCAGGGGAAGCAAAGAAAAGACGCCATCTAAACGAGGAACCTCACCATCTCTTAAGTCGCGATCTTCACGGGCACTTTCTAGAACTCAGAGCCCCTCTCGTAAATTCATTGGATTTTCCAGTGATGAAGAAGACGCTGGGCCAAGCCTCTCGAGTACTTTCACGGAATCGGGTAAATTGAGGTTTAAACGAAGAGGACTGATGAACAGCAATGATGATTTGCCTGAGGAAACATCCTCCCAGAGTAGGCAACCTTCTCCTTTGAGGCGCAGAAGTTATGACCGTGTGCCAAGTTTAATGGATAACTTTTCTGAGAGGACGTTATATACAACGGAAGGAAATAGCGGAGAGTTTTCTGATCAAGATGGACAAGTGCCCCATCAATCAATAAGCAATTCATGGCGCAGAATTCCAAATCGCGATCGAGAAGAGAGGGAAAGACCATTCCTGAAAGTGCGTGCTTCCTCAACCTATGACACAAAGGAAAGCGCGAATGTTGATTCCAAATTAAACTCGACACTTCGAGAGAGACCAGCTGGAGCCGAAGTCTTGAAAGGCAGCTCAACTTGCTCTTCAACAGGAAAGATCGTATTGGTGATAAGTGGAATCTGCGTCGTTCTGCTGTTGTGCGCCGCTCTCAAGTGGCACTTGAATTACCAACAGCCGCAACTAGTGACGCTCCCCATTTGTAAAGGAGAGAATAGTTTGGTTAAATTTCGTAAGGGTGAGAAGCCCCTTAAGTGTGCGCCAGTACTCAATATCAGCCAGCAATATGCAGCCTTGTTGTATGAACAGCTTGCAGAAAAAGCAGGGCTATGTGATTGCGAATATGCCAGCTGTGACAGTAGGAACTTGTCTCGCATATCATTTGAAAATCGAGTCAGGAATGATAATTCTGGAAGAAAAGTGGAGGATCAAAAATGGATCTTGAACACAACACTGGAATTAATTCTGAATAATTCTTATGGGAAATTAAGGTTATTTGATGAGAATGGCACAACAACAAATGATATCAATAAGGTGAAATGGATTGATTGTGCTGTTTCAATGAAACCTTTATTCTGCCGCATCAGGGAAGCAATGTCCCGGTTGGCTTATCTGTCATCTGGTATTGGTTGTGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGTACGTCAAAGATGGAGGAGAGAAGAACAAGAAACAAGAATGATGTACCAGTTTGTGGAGAAAATTATTGAGATCTTACGAGAGCACCATCAAGCCAGTAAAACTGAAAAGACCTTGTTGCCTTATCTTCCAATTCCTCATGTTAGAGACATGTTGATTCCTCCATCTGACAGGCAAAAGTTGCTTGGGGCCTGGAATAGAGCGGTGCGATTTTTGAGTGGCAACGAGTCTCGCATTCGAGTTGAAAGCCAAAGAATCGCCGGGGAAGATTTTGAAGTTTGGAGGTGGATCCAAGTTGCCACGCCCAAAGCCCACAGCCCAAAATCGGCACGTTTAGGCAACAAGCGTGGAAAATACTGGCAGGGACAAGCGTTTGAAAACTTTCAATCAGCTGTAAACCCACCTGTTATTAGTCCAACGCCATGTTTGAAGATACGAAACATGTTTGACCCCGCTGTTGAAACTGAAGATGGCTGGCACGTTATGATCCAAGATGCCATTTTGGAGAAGTGCATCGAGAACGGAGCTGGCGTAGTCCATATTGCCGTTGATAAGAGTTCTGTCGAGGGATGTGTTTATGTCAAATGTGATACTCATCACTCTGCGGGGTTGGCCTTTCGAAGTCTTCATGGCTGTTGGTTTGATGGTCGACTTGTTGCGGTGAAATACCTCACCCTTAAGAGATATCATCAGCGGTTTCCCGTTGCCATGGAAGCCACCGAACGGATCAATCCATCTGGGACCTCCCCGTCGTCGCTTGTTGTATTTGATCCCGCTACTGGAGATGAGGATGTGAATGATTCTGATATTGAACTTTAG

Transcript

acyt_s0216.g39.t2

TGTGGTACGATAAAGAAAAGCAAAATGTCAGGAGATGAACTTCGTGATGTCGAGGTACAAATCCGCGGGGACGACATGGAAGCTAAAAACGGACATCAAATTAGCCTTAGAGATAGAGATCCAACTGCGATGAATGATCATGTAAAGGTATTTTTCCAAGACGTGTTTGCAGAGCCAGAAGGATCCTACAGTATAGATGGAGTTTGGCGCACTAGCTTTACTGCATTTGTCAACACCAAGTATTGGTGTTACCGCATCATAACAGCCATCCTCGGAATTCCTACCGCGGTGCTCTGTGGGATGTACTTTGCTTGTCTTAGCTTCGACTACATTTGGTGTGTGATGCCCTGTTTGAAGGCCTACATTATCGAACTGCAGTGTCTAGGAAAGATATTCGGACTTTGCTTGAGGACATTTTGCGATCCCTTTTTCGAATCTGTTTCCCGGATTTTCAGCGGAATCAAGATTTCGTCGCAAAAAGTGTAAATGAAGTTTTTTTAAGTAACTTTGAGTCAATATTCGCTTGTAATCATTCCAAAAATTAGGCAAACGAACTCTCCTCAACAAAGCAATCATCTCAAGGTCACGTCTAGTCATGTAATGAAACTGAAATCGATAAAATGGAGAGGTTATTCAATGGACGTCTTTGTGGGCCCAAACGAGATTCTTAAACCTTCTTTCCTAAAAGGTACGAGTGGaaaaaaacaagacaaaacaaattaaaacaGGTTAAATTCTTGAGGTGGGTTGCAGAGCAGCGGTTTGTCCAACCAGGTAACCTCGCCTGATCAAGAATCCTTGGAACATGGCGGCCAAAGAGAGTGCTATTTCTGATGGAGAATTGCGCCGAAAACTCACAGCGTTAGGCGAAGATGTTGGACCCATAACTCCCACGACTAAGTCTTTTCTAATGCGAAAATTAAAACGCTTACAGAATGAAGCAAAAACCGGCAGGGGAAGCAAAGAAAAGACGCCATCTAAACGAGGAACCTCACCATCTCTTAAGTCGCGATCTTCACGGGCACTTTCTAGAACTCAGAGCCCCTCTCGTAAATTCATTGGATTTTCCAGTGATGAAGAAGACGCTGGGCCAAGCCTCTCGAGTACTTTCACGGAATCGGGTAAATTGAGGTTTAAACGAAGAGGACTGATGAACAGCAATGATGATTTGCCTGAGGAAACATCCTCCCAGAGTAGGCAACCTTCTCCTTTGAGGCGCAGAAGTTATGACCGTGTGCCAAGTTTAATGGATAACTTTTCTGAGAGGACGTTATATACAACGGAAGGAAATAGCGGAGAGTTTTCTGATCAAGATGGACAAGTGCCCCATCAATCAATAAGCAATTCATGGCGCAGAATTCCAAATCGCGATCGAGAAGAGAGGGAAAGACCATTCCTGAAAGTGCGTGCTTCCTCAACCTATGACACAAAGGAAAGCGCGAATGTTGATTCCAAATTAAACTCGACACTTCGAGAGAGACCAGCTGGAGCCGAAGTCTTGAAAGGCAGCTCAACTTGCTCTTCAACAGGAAAGATCGTATTGGTGATAAGTGGAATCTGCGTCGTTCTGCTGTTGTGCGCCGCTCTCAAGTGGCACTTGAATTACCAACAGCCGCAACTAGTGACGCTCCCCATTTGTAAAGGAGAGAATAGTTTGGTTAAATTTCGTAAGGGTGAGAAGCCCCTTAAGTGTGCGCCAGTACTCAATATCAGCCAGCAATATGCAGCCTTGTTGTATGAACAGCTTGCAGAAAAAGCAGGGCTATGTGATTGCGAATATGCCAGCTGTGACAGTAGGAACTTGTCTCGCATATCATTTGAAAATCGAGTCAGGAATGATAATTCTGGAAGAAAAGTGGAGGATCAAAAATGGATCTTGAACACAACACTGGAATTAATTCTGAATAATTCTTATGGGAAATTAAGGTTATTTGATGAGAATGGCACAACAACAAATGATATCAATAAGGTGAAATGGATTGATTGTGCTGTTTCAATGAAACCTTTATTCTGCCGCATCAGGGAAGCAATGTCCCGGTTGGCTTATCTGTCATCTGGTATTGGTTGTGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGTACGTCAAAGATGGAGGAGAGAAGAACAAGAAACAAGAATGATGTACCAGTTTGTGGAGAAAATTATTGAGATCTTACGAGAGCACCATCAAGCCAGTAAAACTGAAAAGACCTTGTTGCCTTATCTTCCAATTCCTCATGTTAGAGACATGTTGATTCCTCCATCTGACAGGCAAAAGTTGCTTGGGGCCTGGAATAGAGCGGTGCGATTTTTGAGTGGCAACGAGTCTCGCATTCGAGTTGAAAGCCAAAGAATCGCCGGGGAAGATTTTGAAGTTTGGAGGTGGATCCAAGTTGCCACGCCCAAAGCCCACAGCCCAAAATCGGCACGTTTAGGCAACAAGCGTGGAAAATACTGGCAGGGACAAGCGTTTGAAAACTTTCAATCAGCTGTAAACCCACCTGTTATTAGTCCAACGCCATGTTTGAAGATACGAAACATGTTTGACCCCGCTGTTGAAACTGAAGATGGCTGGCACGTTATGATCCAAGATGCCATTTTGGAGAAGTGCATCGAGAACGGAGCTGGCGTAGTCCATATTGCCGTTGATAAGAGTTCTGTCGAGGGATGTGTTTATGTCAAATGTGATACTCATCACTCTGCGGGGTTGGCCTTTCGAAGTCTTCATGGCTGTTGGTTTGATGGTCGACTTGTTGCGGTGAAATACCTCACCCTTAAGAGATATCATCAGCGGTTTCCCGTTGCCATGGAAGCCACCGAACGGATCAATCCATCTGGGACCTCCCCGTCGTCGCTTGTTGTATTTGATCCCGCTACTGGAGATGAGGATGTGAATGATTCTGATATTGAACTTTAGATTTGTATTGTCTGTTGCTGATTGGATGGCCAGTGTACATCCGCGATTTGAAAATTAAAGGGGTTGGAATTCTCGGGTTGAAGGTAATCAAGCGAAAACAATACCACGCTGGTATGTTCCAGTTGTAGCTCGCTTGATTGGCTGAACAAAGTGCAAATGATCGAAGAAACAAATCAAAGGAAAGAGAAAGCTTGGAATGGGTCGATCAAGATGTTTCATTTGAATGATCACATTATTAAGGACTCAGTATTACAAAATGATTTTTAAAACTAAAAGAACACCTTTAGTGCAGTGAAAATTGTGAACGACAGTTCATAGACGCGAAAATAAGGAACCACCTAAATCTGTCACAAAACTGCACAACAAGAAATTACAACACGTTAGCATGGAATTTCCCGTTTAAGTTTTGATAGGCTAGAAAACTCTTGCAGTACCAAAGACGCTCAACTTTATTGTTACAAATAACTGCCGCCTCAGCTACCATGTCTAGTCCAATCTGTAACTTCGCTCATATTCCGATATTTGACGATTTATCTGTCAAACGTGATTGTGCAATCTTTCTTCGACTCACTCAACAAAAGTCATGCCCGCGAGCGTTTTCCCACACTAAAAGGGACCGATCACCATTTAAGTAGAGGGGGGTAGAGGAGAAAGTGGGGGATGGAGGGCCGTCAGTTTTTTTTGTCGAACATAAGGGGCCTTGAAAGGTCAGAGGGAGGGAAGggaggagtcttcttcagtgaaagtaagaaactttcatttgccacattaaggtattatgtttgacggggggtcctgaagcgatcgaagttggtacctgaaaaacatgaatgctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATCACTCTCTCCAACTTAAATAATAACCGGTCCCTAACCATGGGCTGCACCGTATTGGTTTGTGTTATCGCCTGCGTCAGTTTTGGTTCACGTCTTGAATAGAGTCGATGAACGTAAACGGACCGTTGAAATTTATACTCTCCATACATTTGTGCAGCCAATTTATCCCCCAACAATTTTTTTCGAAAGAGGTTCTCCGATCGAAGGTGTTTTAATTAGTATTTAAGATAGCTGATTCTGATTTTAATTCGAGGTTCCTTGGAAACTAAGGCAATGATCACACTAACAAAAAACACTGCTTTTA

Protein

Uniprot

Uniprot term	Description
Q9WU40	Inner nuclear membrane protein Man1 OS=Mus musculus OX=10090 GN=Lemd3 PE=1 SV=2
Q9Y2U8	Inner nuclear membrane protein Man1 OS=Homo sapiens OX=9606 GN=LEMD3 PE=1 SV=2
Q7JRE4	Inner nuclear membrane protein Man1 OS=Drosophila melanogaster OX=7227 GN=MAN1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09402	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan
PF15519	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan
PF03020	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041885	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR018996	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR011015	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003887	Domain	LEM domain	Interproscan
IPR029123	Domain	Splicing factor RBM39, linker	Interproscan
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR034394	Domain	MAN1, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19410	LEMD3; inner nuclear membrane protein Man1	-	Cytoskeleton proteins	ko04812	deepkoala