Detailed information of acyt_s0252.g13.t1 in Acropora cytherea

Genomic Location: sc0000252_pilon:287961...317375
NR annotation: XP_044164031.1, transcription activator BRG1-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6DIC0SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Mus musculus OX=10090 GN=Smarca2 PE=1 SV=1
A7Z019SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
P51531SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Homo sapiens OX=9606 GN=SMARCA2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08880QLQQLQDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF07529HSAHSA domainFamilyInterproscan
PF07533BRKBRK domainDomainInterproscan
PF14619SnACSnf2-ATP coupling, chromatin remodelling complexDomainInterproscan
PF00439BromodomainBromodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014978DomainGlutamine-Leucine-Glutamine, QLQInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR029295DomainSnf2, ATP coupling domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR014012DomainHelicase/SANT-associated domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR037259Homologous_superfamilyBRK domain superfamilyInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR001487DomainBromodomainInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR006576DomainBRK domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10799SNF2/RAD54 HELICASE FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008094Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:5.6.2.-
Chromosome and associated proteinsko03036deepkoala

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