Gene detail

Detailed information of acyt_s0381.g2.t1 in Acropora cytherea

Genomic Location: sc0000381_pilon:122706...134555
NR annotation: XP_015751539.1, PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107331464 [Acropora digitifera]
Species abbreviation ACYTH · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

acyt_s0381.g2.t1

CAAGTTTCGAGTTTACCCGAATCTTGTTCATCAAATTACACGGAACAGTCTGTGGTCGAGAGGAGGAAGTGAACTTAAATCGATAGATGATGAACCCTGCTCCTGGCGCCCCAAATTATCCAATTGCTTCTCTGTACGTTGGTGATTTAGCAGCTGATGTCACTGAGGCTATTCTGTTCGAGAAATTTAGCACAGTTGGTGCGGTTTTATCGATCAGAGTGTGCCGCGATATTGTAACTCGGCGTTCGTTGGGTTACGCTTACGTAAATTTTCAGCAACCGGCTGCTGCCGAACGAGCTCTCGAAACCATGAATTTCGATCCGATCAAGGGAAGACCTTGCCGACTCTCGCGGTCTCAGCGAGACCCTTCTCTTCGAAAGCCTGGTGTCGGTAAGATTTTCATCAAGAATCTTGATAAAAGCATCGACAATAAAGCGTTGTACGACACCTTTAGTACCTTCGGGAACATCCTGTCTTGTGAGATTGCTCAAGCAGAGGACGGTACGTCGAAAGGGTACGGAAATGTTCTCTTCGACACCGAAGAAGCCGCGGAGGATGCTATTGCCAAAGTGAATGGCATGTTGCTGAACGACAAGAAAGTGTTTATTACCAAATGGATGTCTCCTGGGGAGCAGTTGGTAGGTAACCAATGCAAGAAGTTGGTAGATGTTTACATCAAGAACTTTGGCGAGGACATGGATGACGAACAACTCAAAGAGCTTGCTGAAAACTTTGGAAATGTTCTAAGTCTGAAAGTAGTGACTGGTGAGTCTGGTGGCTCCATGGGGTTTGGATTTGTCTCCTATGAAACACCTGAGCAAGCTCAGTTGGCAGTGAATAAACTGTGTGGTAAAGAATGGAATGGTCAGAAACTGTATGCTGCAAGGGTTGATTATAAGGCAGAAAGTCAGATGGATCTCAAGTCCCAGTTTGAGAAGGAAAAGAGTGAGCGAATAAGTTGTTACCAAGGTATCAACTTGTATGTCAACAACTTATATGACACTATCGATGATCGCCGTCTTAGAAAGGAGTTTAGTGCATATGGTACCATCACCAGTGCCAAGGTCATGATGGATGACGAGGGCAACTCCGAAGGGTTTGGTTTTGTTTGTTTCTCATCACCAGAAGAAGCCACCAAAGCAATCACTGAGATGAATGGCAGGGTTTTGGGGTCCAAGCCACTTTATGTTGCCCTGGCACAGGTTACAGCCCAGCATATGCAGCGCATAGCTGGCTTGGGGATGCAAGAGGCGGCCGGCCAACCAGTTGGACAGGTGTTCCCTCAAGCAGGAGCATTCTACATGTATCCATTAGCCCAGCAAGTGCATCCCCGCTGGCAGCCAATGCAACCCCAACAACAACAAGTACGTCCCTCAGGAATGCAAGGAGGAGGGCAAGTGCCACGTGCAAGGGGCATGCGTCAGGTGCCACCCAGAGTTGTACCTGGTCAGCAGCCACAATCAACTGGGCCAGGAGGTGCCAGCCAGCGCCTGGGCATGGGGCAACCACCTCAGGTGCGAGGAGGACCTGGAGGAATGCAAGCTCAAAGGCCCTCATATAAATTTAGTCAGAATGTGAGGAATCAGCCACAAGGACATCCTGGAAATGTTGGAATGCAGTCTCAAGTTCCAGCACAACATTACATTCATATACCTGGACAGGAACCCCTCAACTCCAGGGAGTTGGCAGCAGCTTCTCCTCAAGAACAGAAGCAGATCATTGGAGAGCGCCTGTACCCCTTGATTCAGTCAACACACCCAGATCAGGCTGGTAAGATCACGGGCATGCTGTTAGAGATTGACAATGCTGAGCTGTTGCACATGTTGGAGTCCCGTGAGGCTCTTGCTGCCAAGACTCAGGAGGCGGTGTCTGTATTGCGTGCCCACAGTGTCAAGGAGAAGAGTGAGGAGATAAAGAATTGAAGCTAACCTTGGTTCATTTTCACCGGACAAGACTTTGCAAAAACCAATAACTCAAAAAATAATGACAACAACAACAACAGAAAGAGGTGAAGAAGACTTTTTAACAGAATAAACTATTAAATTATACCAAAGAAAGTTTTGATTTTTTCCGACTTTTAATATGATGATCCACCTTGTTCCGCCTAATTGCTATAACCTTCTCTATGTGATACTGTATATCACTTTGATTTTTGCTTTCAAAACCCGTACTTTTAGGGTGAGACCCATTTAATTTACATTTATAATTACATAGCGTTATAGCTAAGATAAGGTGGTTTACCAAGGTCATTGAGTCTTCTCCTGCGTCAAAAATACCAAGTAGAACTTCAACTGTTCCCAAAGGTTCTAATTCAATTTTACATAATGCACttatgatttgcttccccgtgagtcgacccctggaacacacacgtaaacccagggggagtggtacagttttggtatttctttttgccccgcggaggaggggagttgtttagtttttgaaacgacttcactggaccacgaggacataaccacggaatttgttcgggttttggtcagcggtatattgctctagacgagatttttcacggcattttatttcatttcACTAAACTAAAAAACCTTTATGCTTTTACTGCAGCAGAAAAACAAGACAAATATCAAAATGAGGTAGAGTTTTGAATTACTTAATAAAGCAAGCTTTAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QB54	Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=pabpc1a PE=1 SV=1
P29341	Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2
Q9EPH8	Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00658 all species →	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034364 all species →	Domain	PABP, RNA recognition motif 1	Interproscan
IPR002004 all species →	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR045305 all species →	Domain	PABP, RNA recognition motif 2	Interproscan
IPR036053 all species →	Homologous_superfamily	PABC (PABP) domain	Interproscan
IPR006515 all species →	Family	Polyadenylate binding protein, human types 1, 2, 3, 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012 all species →	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008143 all species →	Molecular Function	poly(A) binding	Interproscan
GO:0008266 all species →	Molecular Function	poly(U) RNA binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13126	PABPC; polyadenylate-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.