Gene detail

Detailed information of acyt_s0893.g1.t1 in Acropora cytherea

Genomic Location: sc0000893_pilon:1...8395
NR annotation: XP_029200486.2, pre-mRNA-processing factor 40 homolog B-like [Acropora millepora]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9R1C7	Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1
O75400	Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2
Q80W14	Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR039726	Family	Pre-mRNA-processing factor Prp40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11864	PRE-MRNA-PROCESSING PROTEIN PRP40	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08030	NKX6-1; homeobox protein Nkx-6.1	-	Transcription factors	ko03000	deepkoala