Genomic Location: sc0000991_pilon:8467...11925
NR annotation: YP_009029625.1, ATP synthase F0 subunit 6 [Isopora palifera]
Species Acropora cytherea · all data for this species · gene families
| CDS |
| acyt_s0991.g3.t1 |
| Transcript |
| acyt_s0991.g3.t1 |
| Protein |
| acyt_s0991.g3.t1 |
| UniProt accession | Description |
|---|---|
| O47494 | ATP synthase subunit a OS=Metridium senile OX=6116 GN=ATPASE6 PE=3 SV=1 |
| Q75G39 | ATP synthase subunit a OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ATP6 PE=3 SV=1 |
| Q3T4C2 | ATP synthase subunit a OS=Zancudomyces culisetae OX=1213189 GN=atp6 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013871 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00119 all species → | ATP-synt_A | ATP synthase A chain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000568 all species → | Family | ATP synthase, F0 complex, subunit A | Interproscan |
| IPR035908 all species → | Homologous_superfamily | ATP synthase, F0 complex, subunit A superfamily | Interproscan |
| IPR023011 all species → | Active_site | ATP synthase, F0 complex, subunit A, active site | Interproscan |
| IPR045083 all species → | Family | ATP synthase, F0 complex, subunit A, bacterial/mitochondria | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11410 all species → | ATP SYNTHASE SUBUNIT A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015078 all species → | Molecular Function | proton transmembrane transporter activity | Interproscan |
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0045263 all species → | Cellular Component | proton-transporting ATP synthase complex, coupling factor F(o) | Interproscan |
| GO:0005753 all species → | Cellular Component | obsolete mitochondrial proton-transporting ATP synthase complex | Interproscan |
| GO:0045259 all species → | Cellular Component | proton-transporting ATP synthase complex | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
acyt_s0991.g3.t1.Genes whose expression across the transcriptome samples of Acropora cytherea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora cytherea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
