Gene detail

Detailed information of acyt_s1583.g1.t1 in Acropora cytherea

Genomic Location: sc0001583_pilon:1...5045
NR annotation: XP_029197915.1, high mobility group protein 20A-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DIJ5	High mobility group protein 20A OS=Xenopus tropicalis OX=8364 GN=hmg20a PE=2 SV=1
Q6AZF8	High mobility group protein 20A OS=Xenopus laevis OX=8355 GN=hmg20a PE=2 SV=1
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR051965	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan
IPR022755	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan