Detailed information of acyt_s1756.g1.t1 in Acropora cytherea

Genomic Location: sc0001756_pilon:659...5105
NR annotation: XP_015749758.1, PREDICTED: collagen alpha-1(IV) chain-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q28084Collagen alpha-3(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A3 PE=1 SV=1
P27393Collagen alpha-2(IV) chain OS=Ascaris suum OX=6253 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR019326FamilyProtein NDNFInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR001442DomainCollagen IV, non-collagenousInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14619NEURON-DERIVED NEUROTROPHIC FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan

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