Gene detail

Detailed information of aech_s0001.g429.t1 in Acropora echinata

Genomic Location: sc0000001_pilon:5846037...5853220
NR annotation: XP_029197502.2, nuclear factor NF-kappa-B p105 subunit-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0001.g429.t1

GTGGACGCGCTTGGTCAGCCAAGGATATTATTGGAAATTTAATTAAGCAGCTAATTATGACGCAGCAACGTAAATGAAGAAGGCACTTCGACGATGACTTTGCGTTTCACGATGGTTACTTCCCGATCATTCCATCTTGTTGATATTGCACAAATCAGCGGGAAAATTCCCTTATGCATCAGAACTTGTTATATACAGCACAACCCGCCATCTTTGGTCTCCACCATAAGCAATAGGACGGTAACACACAAAAGTTTGGCGTAGATATTTCCCCGCTTACTTTTAATTTATTCCAGTTAAGTTTGAGTTTGATTGGATATCAAGGTAGAAGAAGTTGTCGGTAAAAGGATGGACTCACCCCAACAGCAACGAAAGCTAGTCCGACGAGGAGCCCCGTCAAAAGCAATTTCACAATACCATCTTTCTGCAGTTATTCAGAACGGAGGAAAGGCAGTTTTGCCTGAATCGAATACTAATCAATGTGACTCAGGGTTTGGTGATGATGAAGAACTTCGTTCTGTGAGCCTGGAATCGGACTCTGAAGTTTCAATACGTAGTGTTGAGGAGAAGACACAAAATTTGACCATCGACGATCCTAACACGAATATCAGACATTCTTCTCCAGATTCATCTTCCTACGAGGAGCTTGCACGAAACGAAGAACTGTTACTTAATTATGCTCAGCAGAACGATTCTAGATATTTACTGGCTCAAGACCCTGTCAGACATCTTCTTTTCGCTCAGGATGTCGACGGAGACACTGCCCTTCATCTGTCGATTATCAACATGAAACCAAAGGAAACTGATTCAATCATTTCTGTTGCGCCGTACATAGAACTGCTGGATATCTACAATAATCTCCGACAGGCACCTCTTCATCTTGCAGCAATAACTCGTCAGCCTGCTGCAATGCGTCGACTACTGGAAGCCGGAGCATCGCCAGACATCCCTGACCGCAAGGGACGAACACCTTTACATTTAGCCTGTGAACAAGGAGATTTTGACTGTGTCAAAGAAATAGTGAGGCCTCTTCTAGAAAGCAGATGGAGCGAAGAAACGAAGGATAGAGTGTATAACATGCTGCATGAAAGAGATTATGAGGGATTCACTGCTTTACACAGTGCTGTGTTCAAGAATAACATTCAAATTGTGACTTATCTTGTGTCTCTGGGAGCTGACGTCAATGCACAGGATGGGAAAAGTGGACGGTCGCCGTTACATCATGCTGTTGAAGTACGCAATTTGTCCATGATCAATTGCTTGTTGCTTGAGTGCCGGGCTGACCCTGATGTGATGACATTTGATGAAATCACGCCTCTGCACATTGCTGCTGGACGTGGCATGGAGTCAGTTGTAGCACTGCTACTTGCTGCTGGAGCCAACCTTAACCTCACGAACTATGAGGGTGAATCACCGTTTGATGTTGCAGGCTCAGCTCAGATCCGTAGAATGGTAAGCTGCCAACTGCCAAGTATTGACCATCAAAACTTATAAATTTTTTTGTTGCTTAGAAACCCACCAACCTGCATATGAGCTTGCAATTCAGTAGAAAAATTGAAAAATCCAAATGCTGCTGTGTGTCACCAATCTAATATTCTGCAAATATTTCGCTGGAAACAAAATTCCTGGCTATGATAACTGTTTTTATTGTATTGCATGCATTTTACGCAAAATTTAAATGTTAAGCTGAAGATTGGGTATTGCTTTTGGGTATTAAACCAAATTTGTTAGAAAAAGACTCTTTATTAGCTGCATAAATTGGTCATGAGCTGAGCTGTGTTAAGAAAAACTTTGGAAAGGGGTGTGCTTTGTGATGTTGAGTTGTGACTTTTTCTCAGGTTCTGAAATCTAAAAAACATCCATGAACTATACTTTGGTTCAGAAAAAAAAATACCGAGTACAGTTCTAATGGAATTGGCTGGTCAGTAATAATTAAGGTTCGTTATAATTATTTCTAAGTGGTGTATCAAAACAGATTCTCCTGAATAGAAAACGTGAGAACGTTTATTACAGTGCGGGATGTTGGTTAGAGGAATAAATTATGATTAATCAT

Protein

Uniprot

Uniprot term	Description
P19838	Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 PE=1 SV=2
Q9Z2F6	B-cell lymphoma 3 protein homolog OS=Mus musculus OX=10090 GN=Bcl3 PE=1 SV=2
Q6F3J0	Nuclear factor NF-kappa-B p105 subunit OS=Canis lupus familiaris OX=9615 GN=NFKB1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051070	Family	NF-kappa-B Inhibitor	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007253	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356	Biological Process	cellular response to tumor necrosis factor	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan