Gene detail

Detailed information of aech_s0002.g422.t1 in Acropora echinata

Genomic Location: sc0000002_pilon:4929655...4937043
NR annotation: XP_029184719.1, UV excision repair protein RAD23 homolog A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0002.g422.t1

AGAAGTCTCGCAAGTGAGGTGACGTCAGTTGTTTCAAGATTGCACGCATCAGATGCTTGGGCTTCAGTCATCTGAGAGATTTATTGAATTTTACTGGGTACTTCTAAGGATACAACTCCTTTCTGGAACTACAAATCCGTTTCAACTAAGCGTTCAATATGATTATAACGTTTAAAACGCTTCAACATCAGACGTTTAAGCTAGAAATCGAGGAAAGTGCAACGGTAGTGGATCTAAAAAACAAACTGGAAACTGAGAAAGGAAAAGATGCATACCCAAAAGCTGGTGTGAAACTTATATATGCTGGTAAAATACTTAATGATGATCAGCCCTTATCTACATACAAAATAGATGAGAAAGGTTTCGTTGTTGTTATGGTGACAAAGCCAAAGGTCACATCAACTCCAGCCCCAAGTCAGCCAGCCACAACACCACAGGCAACTTCAGTTGCAAGCACAGACACTACAGCAAGATCTGGTGATGACAGTAAACCAGAAAGTACTGATGCCCCTCCATCAGCTGCAGAAGAGCCTGCATCCACAACAACTCCTACAGTATCAACATCTGCAGCATCATCAGGTGTTGAGCAAGCACTTTCCACAGCTGAGTCTACACTTGTGACTGGTGCGGCTTATGAAACAATGGTAACTGAAATGACTAACATGGGATTTGAAAGAGATCAGGTTGTAAGAGCACTAAGGGCAAGCTTCAACAATCCAGACAGAGCAGTTGAATACTTAATGACTGGAATACCTGAGTTACCACCAGATCCACAAGCTCCAACAGAAGGTGAAGAACCACAACAACAACCAGGAGAGCAAGGGGGTGAGGAACCAGTGTCAGGAGGATCAGCTCTTGACTTCCTGCGCTCTCAACCTCAGTTCATTAGTCTCAGGAGAATGGTTCAACAAAATCCCCAAAGTTTACCCCTATTACTACAGCAACTTGGGCAAGCAAATCCTCAGCTCCTACAGCGAATTAGTGACAATCAAGAACAGTTTATAGCAATGCTAAATGAACCAGCACCAGACCAGGCTCCCTCTGCCGGGTCACAGcaacctcaacctcaacctcaacctcaGCCCGGAGCAGGGGACGATCAGCCTCGAGGAGTTATGACCATAAACGTGACAACTCAAGAAAAAGAAGCTATCGAAAGGCTCAAAGATCTTGGATTTTCCGAACAACAGGCGGCTGAAGCTTACTTTGCGTGTGAAAAGAATGAAACACTGGCGGCAAACTTTTTACTCAACGACTTCAACGACGATGAATAAAATTTCGAGAGAAGAGGTCCTGTTAAAATGACTTTTTTATATTTGGACAAGCGCTAAGTGTACCAAATTGGGTCATGGCTGTGTCGAATGACTGGGGTTTCTTCCTTGATTTTGTTTGCAAATAGTACTCGGTGTTAGTTGTCTATTCAATATAATTATTATTCAGCTACGGTTGTGACAACATCTAACGGAGTAATTATCACTGTTATAATTTTGCCGATATTTTGTTTATTCCTGGTAATTTAAATGTAGTGTGAACTGTACGACTGTGTTCACACAAACCGTAACTTAATTGGCTTGTCTCATCCGATGACTTAGTTAGCTTACAGGGCCAGCCGGCCATCAATCACAGCATTCGATTACAAAATCAAAGATGGATTCTTCTCAGAGAGAATTTTACAGGCGAAGAGATGCGAGTACAAGATATGAAGTTGTTGCAGTGGAAAATCTCCTCTGGACCGAACCAAAACAAAGTGACATTTAGTTTAAAATGTGGCTTAAGCGCAATTTAAATTCCTCACCTTAAAGTGCAATTTTGCTTTAATACAGTACTGCTGCTAAGTTTATGGTTAAAACTCTGTAGCACGGAGGTAGGAATGTCACTGAAGCTCGCTTCGCTGTGACACAGCTGTTACTGCGTTGTGAAAACTGTCACGCTGCGTGACTCTAGCCTTGCCACAAATTAAATGACCAACAGTTTTAAAGAGGACTTGTTCGCTTGAGAACTTAGGAAGGGATCCTCTTCGAAGGGTAGGCTTCACAGTTCAACCGCTAAAACGAAGCTTACTCTTTTGTACATCTCTGCGCAGTCCGAACAGTTCAACAGTGTAAGCCGAAAAACGCTTGTGGGTATAGTGCTACAGCTTTTTCTGCTATTCTCACCTTTGCCTGAGAGGTCGGAGGGATTAATGTCA

Protein

Uniprot

Gene family

Uniprot term	Description
A3KMV2	UV excision repair protein RAD23 homolog A OS=Bos taurus OX=9913 GN=RAD23A PE=2 SV=1
P54725	UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A PE=1 SV=1
P54726	UV excision repair protein RAD23 homolog A OS=Mus musculus OX=10090 GN=Rad23a PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF09280	XPC-binding	XPC-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036353	Homologous_superfamily	XPC-binding domain superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR041811	Domain	RAD23A/RAD23B, UBA1 domain	Interproscan
IPR004806	Family	UV excision repair protein Rad23	Interproscan
IPR015360	Domain	XPC-binding domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10839	RAD23, HR23; UV excision repair protein RAD23	-	DNA repair and recombination proteins	ko03400	deepkoala