Gene detail

Detailed information of aech_s0002.g591.t1 in Acropora echinata

Genomic Location: sc0000002_pilon:7157771...7163210
NR annotation: XP_029189366.2, TNF receptor-associated factor 3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0002.g591.t1

ATACCGAAATATGTATAAAAGGTACTACAGTCGCAATGATACAAGAATTTGAACAAATAGTTGACGAAGATTGTCATATACCTGAAAAAACATGTGTGTCAAGGTTGAAGATAGAGCACAGTTTGTGGGAACACTTGATGAGCGGCTAACTTGTCCAATTTGCAAAATGGTTTTCAGTGAACCGTGGCAAACTTCTTGCGGTCATCGTTTTTGCAAAAAATGCCTCGATGGATGCTTGCAACTAGGGTCAGAAATTCTAAGGTGTCCAGTTGATGAAGAGGAATGGGAGCGCGAGGGTTTTTTCCGAGATAAATGCTGTGAGAGGGAAGTTTTGAGCCTACCATGTTTTTGCCGATACAAGAACAGAGGCTGCAATTGGAAAGGAGAACTCAGATATTTGGAGACCCACGAGACAAGCTGCCAATACAGTGACGTGAAATGCCAAGCCTGTGGTGAAACGATGGAAAGAAAGAAACTTGAGGAACACGCATTGAATGACTGTATCAACAGGGCGCGAAAGTGTACATATTGCGGAGAAAAAGTGCCACATAGCAAAATGGAGGATCACTTGGAGATTTGCCCAAAGTTTCCAATTGGTTGCATCTTAAACTGCGGTCAAGGGGATATACCACGTGATATGATGAACGAGCACGTGACCATCTATTGTCCCAAATCGGAGCGTCCTTGTCCGTTTAGTATTCATGGCTGTGAATTTAAAGGTACGAGTGAGAGCCTAGACACCCACGTCAAAAGCTCCATTGAGTATCATCTAAAACTGATGAGCGACTCTAGCTATGAATTCAACCGGAGGCACAAGGAAATGGAAGAAAAGGTCTCCCGTCTTGAACACGAGAGGGACGCGTTGGAGCAGCAGCTTCAAAATCAGACTGAGGAACTTGTGGTTGCAAGGACTAATATACAAACACAACAGACAAAAATAAGCATGATAGAAAAAACAGCTTTCGAACAGAAGAGAGACATGGAGAAACTGCATCGTCATTTCGAAGTTGCCGGGAACGGAGCAAGCGGAGATGCGTTGTCTTCGCAAATGGAAGAAATCATGACTATTGTAAGAGAACACGAGACTCGGGTCAATAAACTGCATAACGAGCTTACGAATCTGAAGGCGACTAGGTTAGCGTCGGACGATGCAGACCCTTGGACGAAGGCGGGCTTGTCTCACCAGGCTTGTGAGCGGCGCTTTGAAAGAAATGAACATCAGCTGGCATTACACGAGATTCAACTTTCTGAGCAGGATGTGCGCACGCAGATGCTGGAGGCCACGTCGCATGATGGTTTTTACATTTGGAAAATTGATCAATACAGTCGACGATTCCAGGAAGCTGCTTCTGGCAAGACAGTCTCAATCTATAGCCCCCCATTTTACGTTGGGCGCTTCGGCTACAAAGTATGTGCCCGTATTTACCTCAATGGTGATGGGATGGGTAGAGGAACACACCTCTCTGTGTTTTTTGTCATCATGCGTGGTGAATATGATGCTCTATTACAGTGGCCGTTTTCTCAAAGAGTTCATTTTCGGCTTCTTGATCAAGACAGAGTGAAAGACGCTTGCGATTCGTTTCGACCAGATCCCCGAAGCACAAGTTTCAAAAGACCTTCCTCAGACATGAACATAGCATCGGGCTGTCCCACATTTATTTCCATTGGGCAGCTTCGTCAAGGTGGATACATAAGAAACGATACAATGTTTATTAAAATTTCAGTAGATATGATCGGCCTCCAAGGAAATACAGCAAGTAACCATTGACGATTATCCTGCTTTTTCACCTTGCAGCAACCGCAGTGATTTAATCAGCCTGCGGTTAGTGATCGCATTTCCTTCCTTAATATGAGTCTTCAAGATTGCCATAAACTATTTATTTGATCGTTCAGGTTCGCAGTTTGGCAATCACTGGCTCATATCGAATTAATGTTTACATAATTTATATATTTATTTCTCATTTGCAAAAATTGGAATCGAGATTAAATGCCCTTGAATAACAATTTTTACAAAACGTTAGGATTTAATTGTAACTTAAAACATCAAGGGATTTCACAAGGTAAACAGAAATCTATATGGAGTTCATCCACTTTACAGCAAAATTAGTCTACTGCAAAAAATTGTTGGCACACCGCCAAGGAAATTCAGCAAATAACTATTGACGATTATCCTGCTGGTTCAGTGATTCAATCAGCTGGCAGTTAGTGTACGGTATAAAATAATTTGTTAGAGTTAGAACCGAATATAAATTTCAATGATATATTTAAGGCTGGCCAAGCCAGCCTCTTCAAATAGCCTCTTTAGTTACAAGGAGAAATGTGTAGATTTCCTTCCTCAATATGAGCCTTAGAAGTGGCCATAAACTATTTATTTCATGGCGCAGGTTCGCAGTCTGGCAGTCAAAGGCTCACATGGAATTAATTTTTACATAATTTATATATTTATTTCTCATTTGCAAAAATTGGAATCGAGATTAAATGCCCTTGAATAACAATTTTTACGAAACGTTAGGATTTAACTGTAACTTAAAACATCAAGGAATAATTATTTTTATTTGCCATTGGCAAAAATTGGAATCCAGATTAAATGCCTTTGAAAAGTTTTTTGTAGAAAACATAAATATTTATTGTAACTTAATATCAAATTTTCATGTAAAGAAATTTCATTAGGTAAACCGAGATCTTTATTGATTTCATTTGCCTAATAGTGAAATCAGTTCCTTGAAAAACGATTGGTTGCACACAGTGCTGATTACTTATCAATAAAAGAATGTAATAATT

Protein

Uniprot

Gene family

Uniprot term	Description
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1
Q13114	TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR012227	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03174	TRAF3; TNF receptor-associated factor 3	-	Alcoholic liver disease	ko04936	deepkoala