Gene detail

Detailed information of aech_s0003.g173.t1 in Acropora echinata

Genomic Location: sc0000003_pilon:2649652...2663555
NR annotation: XP_044170021.1, uncharacterized protein LOC114960505 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aech_s0003.g173.t1

ATGCGTTGTCAGGAAGCATTGCAAGTTCTTAAACTTGAAGGATGGCGTAATGCAGCTAAGGTGCTGAAAGAACCGAAGGAGATCCTCAGCCGAATGCCAAAGGATAGCAAGAAGACGGATTCCTTCAAGCTAGCTAGAAGTTCATTCCTGTTTGCTGAGGGTGAAGTCTTTTACGCAGGTGGGAATTTTCCGAGAGCGCTTAAAGTCTTGAACAAATCGCTCAAGATAATGGAAGTTCTGCTAAAAAGCCACACAAGCACCTCTCGATGCCTGAATGTAATCGGTAATTGCTACAGTAAACTGAAGCAACCTAAGGAAGCAATTAAGTATTACAAAAGAGCGTCGGCAATGCGAAAAGAGCTCTCGCGTTCAGGCGAGCATTGTGACATGCCACTTTTTCAAAGTCAAATCGGAACAGTTTATGAAGCAGAGAAAAACTTTCATGAGGCTATTGATTATTACAAAAAGGCGTTGGATCTTGCAGGGAAGCTTAAACTCCCTGGGCTTTTATATGCAGCGCTTTACAACAGGAACATCGGAAATGCATATGCTTGGCTGGAACAGTACGATCAGGCATACGAGTATGCTAAGAAAGCATATATCATTAGGAAAGACGTCCTCGGCAACCACCCATTAACTGCCCGGAGTGCCTTTCAAATGGCGGAAATCTGTTTGTATCTCGATGAGTTTGACGAGGCGGATGAATACTATGAAGAAGCTTGGGAGATTGAGAAAACCTTGGGGCAAGGAAACCACAGCGAGGTGCGTGACAGGATCATTACAAGTTACGGGAAGACACTAAGTGGACGAAGGAAGAAGGTCTTCGAAGAGGAAGTGTTGGAATTTTACAAGCGTTGCTGGGACGAAGAAAGAAGCTGCGAGGACTTTGCGTTCACGCAAGCTAACAAGAAAATCATTGATTATATCAATGAACGACTGGAGAGTGGCGGGGGTGATAAAGAGATGAAGAAAAAATATCAACGTGAGGCACTTTGGTTTTACGAGGGAACGTGGAAGTCACCTGACACTAAAAGGCTTCCATACGAGTTTAGAGAAGACATCTTAACCACTCTATTGAGATTGTACGACATCCTTGGTGAAAAGGAATTGCTAGGGAATTACAAAGTCGATGAATTTAAATTTTACGAGAAACGATGGAAGAAAGAGAAAAAAGTCATGAAACAGCAGGATAAATATGATATCCTCAGTACCCTGGTGGACCGTGCTACATTTCTTAGTTATGACGAGAAGGTAGTCAAGTACAACAAGCTTTTGCAGGAAGTCAGGAAACCAAAAACGTCTTATCTGCGCTCTTTATTACCATTTGGATCAGCAGCGGCtgataacgataacgatgacgacataagcgatgaaagtgatacggaagctggtggtgctgttggtaatgatgatgacgatgtcgacgatggtgatgaagttggcgatgaagaggagaagaaggaggacgaagaggataaggaagcggttgaagaggggatagactacggagggaatgaggaggagcaggacgaaggaggtgtccaagacgaggaggtggagACACACGAGCAGGGAGATCACGAACAGGACAGTACTGCTGGTGATTTTGGTGAGGAGTTGACTCAAACAACAGAGCATTTACAAGAAGAACCAATTGAAGAGCATCCAGAGAAGAAAACAATATTCGAAGGAGTGGTGACAAGCCGCGAAGCCGTCATGACTTTGCTCAATTCGAAGAGGGAGCTGATACCCATAGTGGCAAAACAAGTGAATACTTCATGGAAAAGGCTGGCAAGAGAACTTGGTCTAACCCTAGCTGAAATTGACAACATCCAAGAAGAAGACAAAGATGATCACGAGCGCTGCTGTAAGGTCTTGGATACTTGGTGTCAAAGGCATGGCTCAGAGGCAAAGATCAAAAAACTTATGATGACTTTGACCGATGCAGGACTAGCTATTGTGAATAACGACGTCATAAAGTGCTTGGGTCTTTTAGATCGTAATGGCTAA

Transcript

aech_s0003.g173.t1

GATTTGTTATTTCTTGGAGGCCATGCTTGATGCTAACCAGAGAAAGAGAATTTTCCGCTCATGGGCCGAGAAAGCAATGGAAAACTCAGTATTCCGAAGCGAAATGCGTTGTCAGGAAGCATTGCAAGTTCTTAAACTTGAAGGATGGCGTAATGCAGCTAAGGTGCTGAAAGAACCGAAGGAGATCCTCAGCCGAATGCCAAAGGATAGCAAGAAGACGGATTCCTTCAAGCTAGCTAGAAGTTCATTCCTGTTTGCTGAGGGTGAAGTCTTTTACGCAGGTGGGAATTTTCCGAGAGCGCTTAAAGTCTTGAACAAATCGCTCAAGATAATGGAAGTTCTGCTAAAAAGCCACACAAGCACCTCTCGATGCCTGAATGTAATCGGTAATTGCTACAGTAAACTGAAGCAACCTAAGGAAGCAATTAAGTATTACAAAAGAGCGTCGGCAATGCGAAAAGAGCTCTCGCGTTCAGGCGAGCATTGTGACATGCCACTTTTTCAAAGTCAAATCGGAACAGTTTATGAAGCAGAGAAAAACTTTCATGAGGCTATTGATTATTACAAAAAGGCGTTGGATCTTGCAGGGAAGCTTAAACTCCCTGGGCTTTTATATGCAGCGCTTTACAACAGGAACATCGGAAATGCATATGCTTGGCTGGAACAGTACGATCAGGCATACGAGTATGCTAAGAAAGCATATATCATTAGGAAAGACGTCCTCGGCAACCACCCATTAACTGCCCGGAGTGCCTTTCAAATGGCGGAAATCTGTTTGTATCTCGATGAGTTTGACGAGGCGGATGAATACTATGAAGAAGCTTGGGAGATTGAGAAAACCTTGGGGCAAGGAAACCACAGCGAGGTGCGTGACAGGATCATTACAAGTTACGGGAAGACACTAAGTGGACGAAGGAAGAAGGTCTTCGAAGAGGAAGTGTTGGAATTTTACAAGCGTTGCTGGGACGAAGAAAGAAGCTGCGAGGACTTTGCGTTCACGCAAGCTAACAAGAAAATCATTGATTATATCAATGAACGACTGGAGAGTGGCGGGGGTGATAAAGAGATGAAGAAAAAATATCAACGTGAGGCACTTTGGTTTTACGAGGGAACGTGGAAGTCACCTGACACTAAAAGGCTTCCATACGAGTTTAGAGAAGACATCTTAACCACTCTATTGAGATTGTACGACATCCTTGGTGAAAAGGAATTGCTAGGGAATTACAAAGTCGATGAATTTAAATTTTACGAGAAACGATGGAAGAAAGAGAAAAAAGTCATGAAACAGCAGGATAAATATGATATCCTCAGTACCCTGGTGGACCGTGCTACATTTCTTAGTTATGACGAGAAGGTAGTCAAGTACAACAAGCTTTTGCAGGAAGTCAGGAAACCAAAAACGTCTTATCTGCGCTCTTTATTACCATTTGGATCAGCAGCGGCtgataacgataacgatgacgacataagcgatgaaagtgatacggaagctggtggtgctgttggtaatgatgatgacgatgtcgacgatggtgatgaagttggcgatgaagaggagaagaaggaggacgaagaggataaggaagcggttgaagaggggatagactacggagggaatgaggaggagcaggacgaaggaggtgtccaagacgaggaggtggagACACACGAGCAGGGAGATCACGAACAGGACAGTACTGCTGGTGATTTTGGTGAGGAGTTGACTCAAACAACAGAGCATTTACAAGAAGAACCAATTGAAGAGCATCCAGAGAAGAAAACAATATTCGAAGGAGTGGTGACAAGCCGCGAAGCCGTCATGACTTTGCTCAATTCGAAGAGGGAGCTGATACCCATAGTGGCAAAACAAGTGAATACTTCATGGAAAAGGCTGGCAAGAGAACTTGGTCTAACCCTAGCTGAAATTGACAACATCCAAGAAGAAGACAAAGATGATCACGAGCGCTGCTGTAAGGTCTTGGATACTTGGTGTCAAAGGCATGGCTCAGAGGCAAAGATCAAAAAACTTATGATGACTTTGACCGATGCAGGACTAGCTATTGTGAATAACGACGTCATAAAGTGCTTGGGTCTTTTAGATCGTAATGGCTAACATTTCATTGGCTAATGATATCTAAAGATCTTTGTGAAAGGTTGGTCCTGATTCAAGAATTCTTTTGGCTCAGGTGGTTCAAGTCCGGAGAACCGGGTGAGAGGTCGGGAGATCGACCCCCGGCCAGCTCATCTCTCATAAAGTGATTGATCAGAAATTGCTGTCTTTGCCAAAGCATCAGTACTTTTCCGTGCTTGTCGTCTCGGACGTGGAGAACAAACTCTGTTAGGCGAGAAAATAAAACAAGAAAGACGAGAAAGCAACAACTTGGAAGGGATGGACACTCCTGTTGGAGTCTAAATATACAAAAGGGTTCGAAATAAATTGTGGTACCGTGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR000488	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan