Detailed information of aech_s0003.g509.t2 in Acropora echinata

Genomic Location: sc0000003_pilon:7371429...7388014
NR annotation: XP_044178114.1, LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase parkin-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9JK66E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1
Q9WVS6E3 ubiquitin-protein ligase parkin OS=Mus musculus OX=10090 GN=Prkn PE=1 SV=1
O60260E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyULD|UBL|NEDD8
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF17978zf-RING_14RING/Ubox like zinc-binding domainDomainInterproscan
PF17976zf-RING_12RING/Ubox like zinc-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047534DomainE3 ubiquitin-protein ligase parkin, BRcat domainInterproscan
IPR002867DomainIBR domainInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR003977FamilyE3 ubiquitin-protein ligase parkinInterproscan
IPR047535DomainE3 ubiquitin-protein ligase parkin, RING finger, HC subclassInterproscan
IPR041170DomainRING/Ubox-like zinc-binding domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR041565DomainParkin, RING/Ubox like zinc-binding domainInterproscan
IPR047536DomainE3 ubiquitin-protein ligase parkin, Rcat domainInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR031127FamilyE3 ubiquitin ligase RBR familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000422Biological Processautophagy of mitochondrionInterproscan
GO:0001933Biological Processnegative regulation of protein phosphorylationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010821Biological Processregulation of mitochondrion organizationInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031624Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:1900407Biological Processregulation of cellular response to oxidative stressInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04556PARK2; parkinEC:2.3.2.31
Mitochondrial biogenesisko03029deepkoala

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