Gene detail

Detailed information of aech_s0003.g564.t1 in Acropora echinata

Genomic Location: sc0000003_pilon:8078114...8084207
NR annotation: XP_029187252.2, poly(A) RNA polymerase GLD2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aech_s0003.g564.t1

CCCATGATAGTTCATTTTCCGGGAATGAGTTCTGCGTGTTCCAAGAAGAAACAAATAGAATGTTTGCAGTCAGCCTTCGCGCAAGTTTAACTCGTCAAATCGAAGAAAAGTACGAGGAAGTTAAAGAAAGGGAACATACATCAAGAAAGAAGAAATCATGGTGCCAAGACATTGAACGCATTATAAAGCAAAGCTATCCCACATCTCAACTGATTCTTGTTGGTTCCTCGGCAAATAGTTTTGCCACTGAAGGTTGTGATGTAGATTTGACGCTTATTCGCCCAAACACAGGGCTCTTTTATGGTTCAACATCAAACGTGCAGGTTCTTCGAAGAATTCGAGACGGTTTGAGAAGCATTCCGACCATTAATACTGAGCTTATCGATGGAGCCGTTGTTCCTATATTAAAACTGAACGATTGGCGTCAGGGATTGGAAGGGGATATAAGTGTTGATATCCACAACTCCATCTTCAACACTTACCTGCAGAAGTGTTATGCAAATATGGACCCCAGGGTCACCCCGCTAGTTGTGACCATAAAGCACTGGGCCAAAGTCTCAGGTATCACTTGCGCACGAGACCACAAGTTGTCGGGGTTTGCCGTGGTGCTTTTGGTTCTATATTACTTACAGAGAGGCTGTACACCTCCTCTTCTTCCATCTCTTCAAGCCATGGATCCAAGCCACTTCAGCACAACAAGTGGTGCCAGTGCTACAGCTGAAAAGCTGTCCGGAAGTTCTCTTCCGTTTTCTGTGAGAACTTACAGGTCCCGCAATAACGATACGCTGGGAAACCTACTAGTTGGTTTCTTCAATTTTTATTGTCAATTCGATTGGTATAGGGTAATATCTGTGAGATTGGCAGACACCAGAAATGTACCCATTGATAAAAAGTGGACAAGACCTTATATTCGCATTGAGGATCCATTTGACTGCAAAAATGTCACTCGTGCAGTCTATCAGTATCCACAGTTTTGCATTATAACGGAGGCCATCAGACGAGCAAAGCAGCAGCTTGCAAATAGTAACTCTTATTTAAATGATATTTTGTAACTCTAGATCAGTCTGAATTTGGCAATTATattgagcaaagtattgctcttgctcccacaaaagtgaagccagcggcgccatcttgttgggaccactatagattactatatgccctgggtaaaataacgtttaagaaaagtgtcccttcttcactatttagcggaataacatgtcgttcgtgggaagcatccaaaagattttcctcccaatgctaacgtgtacgatggggtctcaaggtggtcccaacaagatggctgccgctaactttctaaacattagaggctcgattcagtttttttctttttagatcagtgTTTTTTTTCATCCGGCTGCAGACTGCTTTCAATCAGTGAACTCTTTTCGATCTAGAAAAAAATATAGAGGTGTTCCGGTTATTTCTAACATGTGCATGCTACTCTTACTTTTGTCTTACTAGGTGCTTGTATGACAATTGCGCACGCGCACTTACAGTAACTTTCACCTAAAGGTTCAGACCGCTAGAAGAGTCATTTTGACTTCGATTCCCTATGTGCTGGTGTGAATTGGCCAAAAATACATTTTTTTTCATTATATTTTCAAATTATTTTGCCACTTGACAATTACATATATTAATATAAATACAATAGAGATAATAATGCCAAGAAGGCCTAAAAGAAAATATGAAGCTTACTTTTATCAGGCCTCTTCAATTTTAATTTAGTAGAATAGAATTCACATGAATTAAAGCCACAGACCTGACCTCACCTGTGGCCTGTGACCTGTGTTTTAGACCCGCCGTTACTCCTAAGAAAACTGTTTCTTTACATGATCAAGATTTTGGCCATTTATTAAAAACTGAATATTAAAACTTCTGCGTTTTTGATCTTGGTAAATTTAATTTTTTTTTTAAGATTTAACGAGAGCTTGTTAGCTTTTACCCAGATTGACAACTAATTTAACTCAGTGTTTGGTATGTCAGTCAAGCAATCTGCGTCCTTAAGAGATAAAAAAAAAAACATATATGCATTGGTATTGTCAGCAAATAAAATTAATTGTAATAT

Protein

Uniprot

Uniprot term	Description
Q91YI6	Poly(A) RNA polymerase GLD2 OS=Mus musculus OX=10090 GN=Tent2 PE=1 SV=1
Q5U315	Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus OX=10116 GN=Tent2 PE=1 SV=1
Q9UT49	Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cid13 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03828	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR002058	Domain	PAP/25A-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14079	PAPD4, GLD2; poly(A) RNA polymerase GLD2	EC:2.7.7.19	Messenger RNA biogenesis	ko03019	deepkoala